Universität zu Köln

Journal Article

Liu, Pei Y., Tee, Andrew E., Milazzo, Giorgio, Hannan, Katherine M., Maag, Jesper ORCID: 0000-0002-2578-8872, Mondal, Sujanna, Atmadibrata, Bernard, Bartonicek, Nenad, Peng, Hui, Ho, Nicholas, Mayoh, Chelsea, Ciaccio, Roberto, Sun, Yuting, Henderson, Michelle J., Gao, Jixuan, Everaert, Celine ORCID: 0000-0001-7772-4259, Hulme, Amy J., Wong, Matthew ORCID: 0000-0003-2680-961X, Lan, Qing, Cheung, Belamy B., Shi, Leming, Wang, Jenny Y., Simon, Thorsten, Fischer, Matthias, Zhang, Xu D., Marshall, Glenn M., Norris, Murray D., Haber, Michelle, Vandesompele, Jo, Li, Jinyan, Mestdagh, Pieter, Hannan, Ross D., Dinger, Marcel E., Perini, Giovanni and Liu, Tao ORCID: 0000-0001-6244-7316 (2019). The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35. Nat. Commun., 10. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Mirzayi, Chloe, Renson, Audrey, Zohra, Fatima, Elsafoury, Shaimaa, Geistlinger, Ludwig, Kasselman, Lora J., Eckenrode, Kelly, van de Wijgert, Janneke, Loughman, Amy, Marques, Francine Z., MacIntyre, David A., Arumugam, Manimozhiyan ORCID: 0000-0002-0886-9101, Azhar, Rimsha, Beghini, Francesco ORCID: 0000-0002-8105-9607, Bergstrom, Kirk, Bhatt, Ami, Bisanz, Jordan E., Braun, Jonathan, Bravo, Hector Corrada, Buck, Gregory A., Bushman, Frederic, Casero, David, Clarke, Gerard ORCID: 0000-0001-9771-3979, Carmen Collado, Maria, Cotter, Paul D., Cryan, John F., Demmer, Ryan T., Devkota, Suzanne, Elinav, Eran, Escobar, Juan S., Fettweis, Jennifer, Finn, Robert D., Fodor, Anthony A., Forslund, Sofia, Franke, Andre ORCID: 0000-0003-1530-5811, Furlanello, Cesare, Gilbert, Jack, Grice, Elizabeth, Haibe-Kains, Benjamin, Handley, Scott, Herd, Pamela, Holmes, Susan, Jacobs, Jonathan P., Karstens, Lisa, Knight, Rob ORCID: 0000-0002-0975-9019, Knights, Dan, Koren, Omry, Kwon, Douglas S., Langille, Morgan, Lindsay, Brianna, McGovern, Dermot, McHardy, Alice C., McWeeney, Shannon, Mueller, Noel T., Nezi, Luigi, Olm, Matthew, Palm, Noah, Pasolli, Edoardo, Raes, Jeroen ORCID: 0000-0002-1337-041X, Redinbo, Matthew R., Ruhlemann, Malte, Sartor, R. Balfour, Schloss, Patrick D., Schriml, Lynn, Segal, Eran, Shardell, Michelle, Sharpton, Thomas, Smirnova, Ekaterina, Sokol, Harry, Sonnenburg, Justin L., Srinivasan, Sujatha, Thingholm, Louise B., Turnbaugh, Peter J., Upadhyay, Vaibhav, Walls, Ramona L., Wilmes, Paul ORCID: 0000-0002-6478-2924, Yamada, Takuji, Zeller, Georg ORCID: 0000-0003-1429-7485, Zhang, Mingyu ORCID: 0000-0003-3628-0983, Zhao, Ni, Zhao, Liping, Bao, Wenjun, Culhane, Aedin, Devanarayan, Viswanath, Dopazo, Joaquin, Fan, Xiaohui, Fischer, Matthias, Jones, Wendell, Kusko, Rebecca, Mason, Christopher E., Mercer, Tim R., Sansone, Susanna-Assunta, Scherer, Andreas ORCID: 0000-0002-4254-7122, Shi, Leming, Thakkar, Shraddha, Tong, Weida, Wolfinger, Russ, Hunter, Christopher ORCID: 0000-0002-1335-0881, Segata, Nicola, Huttenhower, Curtis, Dowd, Jennifer B., Jones, Heidi E. and Waldron, Levi (2021). Reporting guidelines for human microbiome research: the STORMS checklist. Nat. Med., 27 (11). S. 1885 - 1893. BERLIN: NATURE PORTFOLIO. ISSN 1546-170X

Pandey, Gaurav Kumar, Mitra, Sanhita, Subhash, Santhilal ORCID: 0000-0002-0077-4597, Hertwig, Falk ORCID: 0000-0003-4784-6516, Kanduri, Meena, Mishra, Kankadeb, Fransson, Susanne ORCID: 0000-0002-9713-3074, Ganeshram, Abiarchana, Mondal, Tanmoy, Bandaru, Sashidhar, Ostensson, Malin, Akyurek, Levent M., Abrahamsson, Jonas ORCID: 0000-0002-9240-3522, Pfeifer, Susan, Larsson, Erik, Shi, Leming ORCID: 0000-0002-7143-2033, Peng, Zhiyu, Fischer, Matthias, Martinsson, Tommy ORCID: 0000-0002-9403-3123, Hedborg, Fredrik, Kogner, Per ORCID: 0000-0002-2202-9694 and Kanduri, Chandrasekhar ORCID: 0000-0001-6271-9078 (2014). The Risk-Associated Long Noncoding RNA NBAT-1 Controls Neuroblastoma Progression by Regulating Cell Proliferation and Neuronal Differentiation. Cancer Cell, 26 (5). S. 722 - 738. CAMBRIDGE: CELL PRESS. ISSN 1878-3686

Peifer, Martin ORCID: 0000-0002-5243-5503, Hertwig, Falk ORCID: 0000-0003-4784-6516, Roels, Frederik, Dreidax, Daniel, Gartlgruber, Moritz, Menon, Roopika, Kraemer, Andrea, Roncaioli, Justin L., Sand, Frederik, Heuckmann, Johannes M., Ikram, Fakhera ORCID: 0000-0001-7796-4746, Schmidt, Rene, Ackermann, Sandra, Engesser, Anne, Kahlert, Yvonne, Vogel, Wenzel, Altmueller, Janine, Nuernberg, Peter, Thierry-Mieg, Jean, Thierry-Mieg, Danielle ORCID: 0000-0001-9568-4211, Mariappan, Aruljothi, Heynck, Stefanie, Mariotti, Erika, Henrich, Kai-Oliver, Gloeckner, Christian, Bosco, Graziella, Leuschner, Ivo, Schweiger, Michal R., Savelyeva, Larissa, Watkins, Simon C., Shao, Chunxuan, Bell, Emma, Hoefer, Thomas, Achter, Viktor, Lang, Ulrich ORCID: 0000-0001-7166-0805, Theissen, Jessica, Volland, Ruth, Saadati, Maral, Eggert, Angelika ORCID: 0000-0003-3476-8184, de Wilde, Bram, Berthold, Frank, Peng, Zhiyu, Zhao, Chen, Shi, Leming, Ortmann, Monika, Buettner, Reinhard, Perner, Sven, Hero, Barbara, Schramm, Alexander, Schulte, Johannes H., Herrmann, Carl ORCID: 0000-0003-4989-4722, O'Sullivan, Roderick J., Westermann, Frank, Thomas, Roman K. and Fischer, Matthias (2015). Telomerase activation by genomic rearrangements in high-risk neuroblastoma. Nature, 526 (7575). S. 700 - 705. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4687

Shi, Leming, Kusko, Rebecca, Wolfinger, Russell D., Haibe-Kains, Benjamin ORCID: 0000-0002-7684-0079, Fischer, Matthias, Sansone, Susanna-Assunta ORCID: 0000-0001-5306-5690, Mason, Christopher E., Furlanello, Cesare ORCID: 0000-0002-5384-3605, Jones, Wendell D., Ning, Baitang and Tong, Weida (2017). The international MAQC Society launches to enhance reproducibility of high-throughput technologies. Nat. Biotechnol., 35 (12). S. 1127 - 1129. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1696

Su, Zhenqiang, Fang, Hong, Hong, Huixiao, Shi, Leming ORCID: 0000-0002-7143-2033, Zhang, Wenqian, Zhang, Wenwei, Zhang, Yanyan, Dong, Zirui, Lancashire, Lee J., Bessarabova, Marina, Yang, Xi ORCID: 0000-0002-3427-0565, Ning, Baitang, Gong, Binsheng ORCID: 0000-0002-8724-5435, Meehan, Joe, Xu, Joshua, Ge, Weigong, Perkins, Roger, Fischer, Matthias and Tong, Weida (2014). An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era. Genome Biol., 15 (12). LONDON: BMC. ISSN 1474-760X

Su, Zhenqiang, Labaj, Pawel P., Li, Sheng, Thierry-Mieg, Jean, Thierry-Mieg, Danielle ORCID: 0000-0001-9568-4211, Shi, Wei, Wang, Charles, Schroth, Gary P., Setterquist, Robert A., Thompson, John F., Jones, Wendell D., Xiao, Wenzhong, Xu, Weihong ORCID: 0000-0002-3988-3571, Jensen, Roderick V., Kelly, Reagan, Xu, Joshua, Conesa, Ana, Furlanello, Cesare, Gao, Hanlin, Hong, Huixiao, Jafari, Nadereh, Letovsky, Stan, Liao, Yang, Lu, Fei, Oakeley, Edward J., Peng, Zhiyu ORCID: 0000-0003-2349-750X, Praul, Craig A., Santoyo-Lopez, Javier ORCID: 0000-0003-1988-5059, Scherer, Andreas, Shi, Tieliu, Smyth, Gordon K., Staedtler, Frank, Sykacek, Peter, Tan, Xin-Xing, Thompson, E. Aubrey, Vandesompele, Jo ORCID: 0000-0001-6274-0184, Wang, May D., Wang, Jian, Wolfinger, Russell D., Zavadil, Jiri ORCID: 0000-0003-0640-5562, Auerbach, Scott S., Bao, Wenjun, Binder, Hans, Blomquist, Thomas, Brilliant, Murray H., Bushel, Pierre R., Cain, Weimin, Catalano, Jennifer G., Chang, Ching-Wei, Chen, Tao, Chen, Geng, Chen, Rong, Chierici, Marco ORCID: 0000-0001-9791-9301, Chu, Tzu-Ming, Clevert, Djork-Arne ORCID: 0000-0003-4191-2156, Deng, Youping, Derti, Adnan, Devanarayan, Viswanath, Dong, Zirui, Dopazo, Joaquin, Du, Tingting, Fang, Hong, Fang, Yongxiang, Fasold, Mario, Fernandez, Anita, Fischer, Matthias, Furio-Tari, Pedro, Fuscoe, James C., Caiment, Florian ORCID: 0000-0002-3325-0466, Gaj, Stan, Gandara, Jorge, Gao, Huan, Ge, Weigong, Gondo, Yoichi ORCID: 0000-0003-2184-6489, Gong, Binsheng ORCID: 0000-0002-8724-5435, Gong, Meihua, Gong, Zhuolin, Green, Bridgett, Guo, Chao ORCID: 0000-0002-6673-0933, Guo, Lei, Guo, Li-Wu, Hadfield, James, Hellemans, Jan, Hochreiter, Sepp ORCID: 0000-0001-7449-2528, Jia, Meiwen, Jian, Min, Johnson, Charles D., Kay, Suzanne, Kleinjans, Jos, Lababidi, Samir, Levy, Shawn ORCID: 0000-0002-1369-5740, Li, Quan-Zhen, Li, Li, Li, Li, Li, Peng, Li, Yan, Li, Haiqing, Li, Jianying, Li, Shiyong, Lin, Simon M., Lopez, Francisco J., Lu, Xin, Luo, Heng ORCID: 0000-0001-5192-8878, Ma, Xiwen, Meehan, Joseph, Megherbi, Dalila B., Mei, Nan ORCID: 0000-0002-3501-9014, Mu, Bing, Ning, Baitang, Pandey, Akhilesh, Perez-Florido, Javier, Perkins, Roger G., Peters, Ryan, Phan, John H., Pirooznia, Mehdi ORCID: 0000-0002-4210-6458, Qian, Feng, Qing, Tao, Rainbow, Lucille, Rocca-Serra, Philippe, Sambourg, Laure, Sansone, Susanna-Assunta ORCID: 0000-0001-5306-5690, Schwartz, Scott, Shah, Ruchir, Shen, Jie, Smith, Todd M., Stegle, Oliver ORCID: 0000-0002-8818-7193, Stralis-Pavese, Nancy, Stupka, Elia ORCID: 0000-0003-3154-4011, Suzuki, Yutaka, Szkotnicki, Lee T., Tinning, Matthew, Tu, Bimeng, van Deft, Joost, Vela-Boza, Alicia, Venturini, Elisa, Walker, Stephen J., Wan, Liqing, Wang, Wei, Wang, Jinhui, Wang, Jun ORCID: 0000-0002-8540-8931, Wieben, Eric D., Willey, James C., Wu, Po-Yen, Xuan, Jiekun, Yang, Yong, Ye, Zhan, Yin, Ye, Yu, Ying, Yuan, Yate-Ching, Zhang, John, Zhang, Ke K., Zhang, Wenqian, Zhang, Wenwei, Zhang, Yanyan ORCID: 0000-0001-7801-0215, Zhao, Chen, Zheng, Yuanting, Zhou, Yiming, Zumbo, Paul, Tong, Weida, Kreil, David P., Mason, Christopher E. and Shi, Leming ORCID: 0000-0002-7143-2033 (2014). A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nat. Biotechnol., 32 (9). S. 903 - 915. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1696

Zhang, Wenqian, Yu, Ying, Hertwig, Falk, Thierry-Mieg, Jean, Zhang, Wenwei, Thierry-Mieg, Danielle ORCID: 0000-0001-9568-4211, Wang, Jian, Furlanello, Cesare, Devanarayan, Viswanath, Cheng, Jie, Deng, Youping, Hero, Barbara, Hong, Huixiao, Jia, Meiwen, Li, Li, Lin, Simon M., Nikolsky, Yuri, Oberthuer, Andre, Qing, Tao, Su, Zhenqiang, Volland, Ruth, Wang, Charles, Wang, May D., Ai, Junmei, Albanese, Davide ORCID: 0000-0002-9493-3850, Asgharzadeh, Shahab, Avigad, Smadar, Bao, Wenjun, Bessarabova, Marina, Brilliant, Murray H., Brors, Benedikt ORCID: 0000-0001-5940-3101, Chierici, Marco ORCID: 0000-0001-9791-9301, Chu, Tzu-Ming, Zhang, Jibin, Grundy, Richard G., He, Min Max, Hebbring, Scott, Kaufman, Howard L., Lababidi, Samir, Lancashire, Lee J., Li, Yan, Lu, Xin X., Luo, Heng ORCID: 0000-0001-5192-8878, Ma, Xiwen, Ning, Baitang, Noguera, Rosa, Peifer, Martin ORCID: 0000-0002-5243-5503, Phan, John H., Roels, Frederik, Rosswog, Carolina, Shao, Susan, Shen, Jie, Theissen, Jessica, Tonini, Gian Paolo, Vandesompele, Jo ORCID: 0000-0001-6274-0184, Wu, Po-Yen, Xiao, Wenzhong, Xu, Joshua, Xu, Weihong ORCID: 0000-0002-3988-3571, Xuan, Jiekun, Yang, Yong, Ye, Zhan, Dong, Zirui, Zhang, Ke K., Yin, Ye, Zhao, Chen, Zheng, Yuanting, Wolfinger, Russell D., Shi, Tieliu, Malkas, Linda H., Berthold, Frank, Wang, Jun ORCID: 0000-0002-2113-5874, Tong, Weida, Shi, Leming ORCID: 0000-0002-7143-2033, Peng, Zhiyu and Fischer, Matthias (2015). Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. Genome Biol., 16. LONDON: BMC. ISSN 1474-760X

Zhao, Chen, Shi, Leming ORCID: 0000-0002-7143-2033, Tong, Weida, Shaughnessy, John D., Jr., Oberthuer, Andre, Pusztai, Lajos, Deng, Youping, Symmans, W. Fraser and Shi, Tieliu (2011). Maximum predictive power of the microarray-based models for clinical outcomes is limited by correlation between endpoint and gene expression profile. BMC Genomics, 12. LONDON: BIOMED CENTRAL LTD. ISSN 1471-2164