Universität zu Köln

Journal Article

Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Peifer, Martin, Lu, Xin, Seidel, Danila ORCID: 0000-0003-4388-3117, Zander, Thomas, Leenders, Frauke, Ozretic, Luka, Brustugun, Odd-Terje, Field, John K. ORCID: 0000-0003-3951-6365, Wright, Gavin, Solomon, Benjamin, Buettner, Reinhard, Brambilla, Christian, Brambilla, Elisabeth and Thomas, Roman K. (2014). Cross-entity mutation analysis of lung neuroendocrine tumors sheds light into their molecular origin and identifies new therapeutic targets. Cancer Res., 74 (19). PHILADELPHIA: AMER ASSOC CANCER RESEARCH. ISSN 1538-7445

Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Peifer, Martin ORCID: 0000-0002-5243-5503, Lu, Xin, Sun, Ruping, Ozretic, Luka, Seidel, Danila ORCID: 0000-0003-4388-3117, Zander, Thomas, Leenders, Frauke, George, Julie, Mueller, Christian, Dahmen, Ilona, Pinther, Berit, Bosco, Graziella, Konrad, Kathryn, Altmueller, Janine, Nuernberg, Peter, Achter, Viktor, Lang, Ulrich ORCID: 0000-0001-7166-0805, Schneider, Peter M. ORCID: 0000-0003-0744-2349, Bogus, Magdalena, Soltermann, Alex, Brustugun, Odd Terje, Helland, Aslaug ORCID: 0000-0002-5520-0275, Solberg, Steinar, Lund-Iversen, Marius, Ansen, Sascha, Stoelben, Erich, Wright, Gavin M., Russell, Prudence, Wainer, Zoe, Solomon, Benjamin, Field, John K. ORCID: 0000-0003-3951-6365, Hyde, Russell, Davies, Michael P. A., Heukamp, Lukas C., Petersen, Iver, Perner, Sven, Lovly, Christine M., Cappuzzo, Federico, Travis, William D., Wolf, Juergen, Vingron, Martin, Brambilla, Elisabeth, Haas, Stefan A., Buettner, Reinhard and Thomas, Roman K. (2014). Frequent mutations in chromatin-remodelling genes in pulmonary carcinoids. Nat. Commun., 5. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

George, Julie, Lim, Jing Shan, Jang, Se Jin, Cun, Yupeng ORCID: 0000-0002-4241-8099, Ozretic, Luka, Kong, Gu, Leenders, Frauke, Lu, Xin, Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Bosco, Graziella, Mueller, Christian, Dahmen, Ilona, Jahchan, Nadine S., Park, Kwon-Sik, Yang, Dian, Karnezis, Anthony N., Vaka, Dedeepya ORCID: 0000-0001-7951-5514, Torres, Angela, Wang, Maia Segura, Korbel, Jan O., Menon, Roopika, Chun, Sung-Min ORCID: 0000-0002-3357-1382, Kim, Deokhoon, Wilkerson, Matt, Hayes, Neil, Engelmann, David, Puetzer, Brigitte, Bos, Marc, Michels, Sebastian, Vlasic, Ignacija, Seidel, Danila ORCID: 0000-0003-4388-3117, Pinther, Berit, Schaub, Philipp, Becker, Christian, Altmueller, Janine, Yokota, Jun, Kohno, Takashi, Iwakawa, Reika, Tsuta, Koji, Noguchi, Masayuki, Muley, Thomas, Hoffmann, Hans, Schnabel, Philipp A., Petersen, Iver, Chen, Yuan, Soltermann, Alex, Tischler, Verena ORCID: 0000-0002-6673-8329, Choi, Chang-min, Kim, Yong-Hee, Massion, Pierre P., Zou, Yong, Jovanovic, Dragana, Kontic, Milica, Wright, Gavin M., Russell, Prudence A., Solomon, Benjamin, Koch, Ina, Lindner, Michael, Muscarella, Lucia A., la Torre, Annamaria ORCID: 0000-0003-4199-1077, Field, John K. ORCID: 0000-0003-3951-6365, Jakopovic, Marko, Knezevic, Jelena, Castanos-Velez, Esmeralda ORCID: 0000-0002-2670-1118, Roz, Luca ORCID: 0000-0001-5817-7149, Pastorino, Ugo ORCID: 0000-0001-9974-7902, Brustugun, Odd-Terje, Lund-Iversen, Marius, Thunnissen, Erik, Koehler, Jens, Schuler, Martin, Botling, Johan, Sandelin, Martin ORCID: 0000-0002-0370-8819, Sanchez-Cespedes, Montserrat, Salvesen, Helga B., Achter, Viktor, Lang, Ulrich ORCID: 0000-0001-7166-0805, Bogus, Magdalena, Schneider, Peter M. ORCID: 0000-0003-0744-2349, Zander, Thomas, Ansen, Sascha, Hallek, Michael, Wolf, Juergen, Vingron, Martin, Yatabe, Yasushi ORCID: 0000-0003-1788-559X, Travis, William D., Nuernberg, Peter, Reinhardt, Christian, Perner, Sven, Heukamp, Lukas ORCID: 0000-0002-3388-3482, Buettner, Reinhard, Haas, Stefan A., Brambilla, Elisabeth, Peifer, Martin ORCID: 0000-0002-5243-5503, Sage, Julien and Thomas, Roman K. (2015). Comprehensive genomic profiles of small cell lung cancer. Nature, 524 (7563). S. 47 - 54. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4687

Lu, Xin, Thomas, Roman K. and Peifer, Martin ORCID: 0000-0002-5243-5503 (2014). CGARS: cancer genome analysis by rank sums. Bioinformatics, 30 (9). S. 1295 - 1297. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

Malchers, Florian, Dietlein, Felix, Schottle, Jakob, Lu, Xin, Nogova, Lucia, Albus, Kerstin, Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Heuckmann, Johannes M., Gautschi, Oliver, Diebold, Joachim, Plenker, Dennis, Gardizi, Masyar, Er, Matthias Scheffl, Bos, Marc, Seidel, Danila, Leenders, Frauke, Richters, Andre, Peifer, Martin ORCID: 0000-0002-5243-5503, Florin, Alexandra, Mainkar, Prathama S., Karre, Nagaraju, Chandrasekhar, Srivari, George, Julie, Silling, Steffi, Rauh, Daniel ORCID: 0000-0002-1970-7642, Zander, Thomas, Ullrich, Roland T., Reinhardt, H. Christian, Ringeisen, Francois, Buettner, Reinhard, Heukamp, Lukas C., Wolf, Juergen and Thomas, Roman K. (2014). Cell-Autonomous and Non-Cell-Autonomous Mechanisms of Transformation by Amplified FGFR1 in Lung Cancer. Cancer Discov., 4 (2). S. 246 - 258. PHILADELPHIA: AMER ASSOC CANCER RESEARCH. ISSN 2159-8290

Peifer, Martin ORCID: 0000-0002-5243-5503, Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Sos, Martin L., George, Julie, Seidel, Danila ORCID: 0000-0003-4388-3117, Kasper, Lawryn H., Plenker, Dennis, Leenders, Frauke, Sun, Ruping, Zander, Thomas, Menon, Roopika, Koker, Mirjam, Dahmen, Ilona, Mueller, Christian, Di Cerbo, Vincenzo ORCID: 0000-0002-2920-1274, Schildhaus, Hans-Ulrich, Altmueller, Janine, Baessmann, Ingelore, Becker, Christian, de Wilde, Bram, Vandesompele, Jo ORCID: 0000-0001-6274-0184, Boehm, Diana, Ansen, Sascha, Gabler, Franziska, Wilkening, Ines, Heynck, Stefanie, Heuckmann, Johannes M., Lu, Xin, Carter, Scott L., Cibulskis, Kristian, Banerji, Shantanu, Getz, Gad, Park, Kwon-Sik, Rauh, Daniel ORCID: 0000-0002-1970-7642, Gruetter, Christian, Fischer, Matthias, Pasqualucci, Laura, Wright, Gavin ORCID: 0000-0002-7000-9305, Wainer, Zoe, Russell, Prudence, Petersen, Iver, Chen, Yuan, Stoelben, Erich, Ludwig, Corinna, Schnabel, Philipp, Hoffmann, Hans, Muley, Thomas, Brockmann, Michael, Engel-Riedel, Walburga, Muscarella, Lucia A., Fazio, Vito M., Groen, Harry, Timens, Wim ORCID: 0000-0002-4146-6363, Sietsma, Hannie, Thunnissen, Erik ORCID: 0000-0001-5355-8508, Smit, Egbert, Heideman, Danielle A. M., Snijders, Peter J. F., Cappuzzo, Federico, Ligorio, Claudia, Damiani, Stefania, Field, John, Solberg, Steinar, Brustugun, Odd Terje, Lund-Iversen, Marius, Saenger, Joerg, Clement, Joachim H. ORCID: 0000-0002-6601-2456, Soltermann, Alex, Moch, Holger, Weder, Walter, Solomon, Benjamin, Soria, Jean-Charles, Validire, Pierre, Besse, Benjamin ORCID: 0000-0001-5090-8189, Brambilla, Elisabeth, Brambilla, Christian, Lantuejoul, Sylvie, Lorimier, Philippe, Schneider, Peter M. ORCID: 0000-0003-0744-2349, Hallek, Michael, Pao, William, Meyerson, Matthew ORCID: 0000-0002-9133-8108, Sage, Julien, Shendure, Jay ORCID: 0000-0002-1516-1865, Schneider, Robert, Buettner, Reinhard, Wolf, Juergen, Nuernberg, Peter, Perner, Sven, Heukamp, Lukas C., Brindle, Paul K., Haas, Stefan ORCID: 0000-0003-3418-3688 and Thomas, Roman K. (2012). Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer. Nature Genet., 44 (10). S. 1104 - 1113. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1718

Seidel, Danila ORCID: 0000-0003-4388-3117, Zander, Thomas, Heukamp, Lukas C., Peifer, Martin ORCID: 0000-0002-5243-5503, Bos, Marc, Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Leenders, Frauke, Lu, Xin, Ansen, Sascha, Gardizi, Masyar, Nguyen, Chau, Berg, Johannes, Russell, Prudence, Wainer, Zoe, Schildhaus, Hans-Ulrich, Rogers, Toni-Maree, Solomon, Benjamin, Pao, William, Carter, Scott L., Getz, Gad, Hayes, D. Neil, Wilkerson, Matthew D., Thunnissen, Erik, Travis, William D., Perner, Sven, Wright, Gavin ORCID: 0000-0002-7000-9305, Brambilla, Elisabeth, Buettner, Reinhard, Wolf, Juergen, Thomas, Roman, Gabler, Franziska, Wilkening, Ines, Mueller, Christian, Dahmen, Ilona, Menon, Roopika, Koenig, Katharina, Albus, Kerstin, Merkelbach-Bruse, Sabine, Fassunke, Jana, Schmitz, Katja, Kuenstlinger, Helen, Kleine, Michaela, Binot, Elke, Querings, Silvia, Altmueller, Janine, Boessmann, Ingelore, Nuemberg, Peter, Schneider, Peter, Bogus, Magdalena, Buettner, Reinhard, Perner, Sven, Russell, Prudence, Thunnissen, Erik, Travis, William D., Brambilla, Elisabeth, Soltermann, Alex, Moch, Holger, Brustugun, Odd Terje, Solberg, Steinar, Lund-Iversen, Marius, Helland, Aslaug ORCID: 0000-0002-5520-0275, Muley, Thomas, Hoffmann, Hans, Schnabel, Philipp A., Chen, Yuan, Groen, Harry, Timens, Wim ORCID: 0000-0002-4146-6363, Sietsma, Hannie, Clement, Joachim H. ORCID: 0000-0002-6601-2456, Weder, Walter, Saenger, Joerg, Stoelben, Erich, Ludwig, Corinna, Engel-Riedel, Walburga, Smit, Egbert, Heideman, Danille A. M., Snijders, Peter J. F., Nogova, Lucia, Sos, Martin L., Mattonet, Christian, Toepelt, Karin, Scheffler, Matthias ORCID: 0000-0002-9031-1368, Goekkurt, Eray, Kappes, Rainer, Krueger, Stefan, Kambartel, Kato, Behringer, Dirk, Schulte, Wolfgang, Galetke, Wolfgang, Randerath, Winfried, Heldwein, Matthias, Schlesinger, Andreas, Serke, Monika, Hekmat, Khosro, Frank, Konrad F., Schnell, Roland, Reiser, Marcel, Huenerlituerkoglu, Ali-Nuri, Schmitz, Stephan, Meffert, Lisa, Ko, Yon-Dschun, Litt-Lampe, Markus, Gerigk, Ulrich, Fricke, Rainer, Besse, Benjamin ORCID: 0000-0001-5090-8189, Brambilla, Christian, Lantuejoul, Sylvie, Lorimier, Philippe, Moro-Sibilot, Denis, Cappuzzo, Federico, Ligorio, Claudia, Damiani, Stefania, Field, John K. ORCID: 0000-0003-3951-6365, Hyde, Russell, Validire, Pierre, Girard, Philippe, Muscarella, Lucia A., Fazio, Vito M., Hallek, Michael, Soria, Jean-Charles, Carter, Scott L., Getz, Gad, Hayes, D. Neil, Wilkerson, Matthew D., Achter, Viktor, Lang, Ulrich ORCID: 0000-0001-7166-0805, Seidel, Danila ORCID: 0000-0003-4388-3117, Zander, Thomas, Heukamp, Lukas C., Peifer, Martin ORCID: 0000-0002-5243-5503, Bos, Marc, Pao, William, Travis, William D., Brambilla, Elisabeth, Buettner, Reinhard, Wolf, Juergen and Thomas, Roman K. (2013). A Genomics-Based Classification of Human Lung Tumors. Sci. Transl. Med., 5 (209). WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE. ISSN 1946-6242

Su, Zhenqiang, Labaj, Pawel P., Li, Sheng, Thierry-Mieg, Jean, Thierry-Mieg, Danielle ORCID: 0000-0001-9568-4211, Shi, Wei, Wang, Charles, Schroth, Gary P., Setterquist, Robert A., Thompson, John F., Jones, Wendell D., Xiao, Wenzhong, Xu, Weihong ORCID: 0000-0002-3988-3571, Jensen, Roderick V., Kelly, Reagan, Xu, Joshua, Conesa, Ana, Furlanello, Cesare, Gao, Hanlin, Hong, Huixiao, Jafari, Nadereh, Letovsky, Stan, Liao, Yang, Lu, Fei, Oakeley, Edward J., Peng, Zhiyu ORCID: 0000-0003-2349-750X, Praul, Craig A., Santoyo-Lopez, Javier ORCID: 0000-0003-1988-5059, Scherer, Andreas, Shi, Tieliu, Smyth, Gordon K., Staedtler, Frank, Sykacek, Peter, Tan, Xin-Xing, Thompson, E. Aubrey, Vandesompele, Jo ORCID: 0000-0001-6274-0184, Wang, May D., Wang, Jian, Wolfinger, Russell D., Zavadil, Jiri ORCID: 0000-0003-0640-5562, Auerbach, Scott S., Bao, Wenjun, Binder, Hans, Blomquist, Thomas, Brilliant, Murray H., Bushel, Pierre R., Cain, Weimin, Catalano, Jennifer G., Chang, Ching-Wei, Chen, Tao, Chen, Geng, Chen, Rong, Chierici, Marco ORCID: 0000-0001-9791-9301, Chu, Tzu-Ming, Clevert, Djork-Arne ORCID: 0000-0003-4191-2156, Deng, Youping, Derti, Adnan, Devanarayan, Viswanath, Dong, Zirui, Dopazo, Joaquin, Du, Tingting, Fang, Hong, Fang, Yongxiang, Fasold, Mario, Fernandez, Anita, Fischer, Matthias, Furio-Tari, Pedro, Fuscoe, James C., Caiment, Florian ORCID: 0000-0002-3325-0466, Gaj, Stan, Gandara, Jorge, Gao, Huan, Ge, Weigong, Gondo, Yoichi ORCID: 0000-0003-2184-6489, Gong, Binsheng ORCID: 0000-0002-8724-5435, Gong, Meihua, Gong, Zhuolin, Green, Bridgett, Guo, Chao ORCID: 0000-0002-6673-0933, Guo, Lei, Guo, Li-Wu, Hadfield, James, Hellemans, Jan, Hochreiter, Sepp ORCID: 0000-0001-7449-2528, Jia, Meiwen, Jian, Min, Johnson, Charles D., Kay, Suzanne, Kleinjans, Jos, Lababidi, Samir, Levy, Shawn ORCID: 0000-0002-1369-5740, Li, Quan-Zhen, Li, Li, Li, Li, Li, Peng, Li, Yan, Li, Haiqing, Li, Jianying, Li, Shiyong, Lin, Simon M., Lopez, Francisco J., Lu, Xin, Luo, Heng ORCID: 0000-0001-5192-8878, Ma, Xiwen, Meehan, Joseph, Megherbi, Dalila B., Mei, Nan ORCID: 0000-0002-3501-9014, Mu, Bing, Ning, Baitang, Pandey, Akhilesh, Perez-Florido, Javier, Perkins, Roger G., Peters, Ryan, Phan, John H., Pirooznia, Mehdi ORCID: 0000-0002-4210-6458, Qian, Feng, Qing, Tao, Rainbow, Lucille, Rocca-Serra, Philippe, Sambourg, Laure, Sansone, Susanna-Assunta ORCID: 0000-0001-5306-5690, Schwartz, Scott, Shah, Ruchir, Shen, Jie, Smith, Todd M., Stegle, Oliver ORCID: 0000-0002-8818-7193, Stralis-Pavese, Nancy, Stupka, Elia ORCID: 0000-0003-3154-4011, Suzuki, Yutaka, Szkotnicki, Lee T., Tinning, Matthew, Tu, Bimeng, van Deft, Joost, Vela-Boza, Alicia, Venturini, Elisa, Walker, Stephen J., Wan, Liqing, Wang, Wei, Wang, Jinhui, Wang, Jun ORCID: 0000-0002-8540-8931, Wieben, Eric D., Willey, James C., Wu, Po-Yen, Xuan, Jiekun, Yang, Yong, Ye, Zhan, Yin, Ye, Yu, Ying, Yuan, Yate-Ching, Zhang, John, Zhang, Ke K., Zhang, Wenqian, Zhang, Wenwei, Zhang, Yanyan ORCID: 0000-0001-7801-0215, Zhao, Chen, Zheng, Yuanting, Zhou, Yiming, Zumbo, Paul, Tong, Weida, Kreil, David P., Mason, Christopher E. and Shi, Leming ORCID: 0000-0002-7143-2033 (2014). A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nat. Biotechnol., 32 (9). S. 903 - 915. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1696