Schoville, Sean D. ORCID: 0000-0001-7364-434X, Chen, Yolanda H. ORCID: 0000-0001-9439-5899, Andersson, Martin N., Benoit, Joshua B., Bhandari, Anita, Bowsher, Julia H., Brevik, Kristian, Cappelle, Kaat, Chen, Mei-Ju M., Childers, Anna K., Childers, Christopher, Christiaens, Olivier ORCID: 0000-0001-5850-340X, Clements, Justin ORCID: 0000-0001-5482-7984, Didion, Elise M., Elpidina, Elena N., Engsontia, Patamarerk, Friedrich, Markus, Garcia-Robles, Inmaculada ORCID: 0000-0002-0165-399X, Gibbs, Richard A., Goswami, Chandan, Grapputo, Alessandro ORCID: 0000-0001-9255-4294, Gruden, Kristina, Grynberg, Marcin ORCID: 0000-0003-1887-7209, Henrissat, Bernard ORCID: 0000-0002-3434-8588, Jennings, Emily C., Jones, Jeffery W., Kalsi, Megha, Khan, Sher A., Kumar, Abhishek, Li, Fei, Lombard, Vincent, Ma, Xingzhou, Martynov, Alexander, Miller, Nicholas J., Mitchell, Robert F., Munoz-Torres, Monica, Muszewska, Anna ORCID: 0000-0002-4578-844X, Oppert, Brenda, Palli, Subba Reddy, Panfilio, Kristen A., Pauchet, Yannick ORCID: 0000-0002-2918-8946, Perkin, Lindsey C., Petek, Marko ORCID: 0000-0003-3644-7827, Poelchau, Monica F., Record, Eric, Rinehart, Joseph P., Robertson, Hugh M., Rosendale, Andrew J., Ruiz-Arroyo, Victor M., Smagghe, Guy ORCID: 0000-0001-8334-3313, Szendrei, Zsofia, Thomas, Gregg W. C., Torson, Alex S., Jentzsch, Iris M. Vargas, Weirauch, Matthew T., Yates, Ashley D. T., Yocum, George D., Yoon, June-Sun and Richards, Stephen ORCID: 0000-0001-8959-5466 (2018). A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Sci Rep, 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

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Abstract

The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest.

Item Type: Journal Article
Creators:
CreatorsEmailORCIDORCID Put Code
Schoville, Sean D.UNSPECIFIEDorcid.org/0000-0001-7364-434XUNSPECIFIED
Chen, Yolanda H.UNSPECIFIEDorcid.org/0000-0001-9439-5899UNSPECIFIED
Andersson, Martin N.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Benoit, Joshua B.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Bhandari, AnitaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Bowsher, Julia H.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Brevik, KristianUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Cappelle, KaatUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Chen, Mei-Ju M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Childers, Anna K.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Childers, ChristopherUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Christiaens, OlivierUNSPECIFIEDorcid.org/0000-0001-5850-340XUNSPECIFIED
Clements, JustinUNSPECIFIEDorcid.org/0000-0001-5482-7984UNSPECIFIED
Didion, Elise M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Elpidina, Elena N.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Engsontia, PatamarerkUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Friedrich, MarkusUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Garcia-Robles, InmaculadaUNSPECIFIEDorcid.org/0000-0002-0165-399XUNSPECIFIED
Gibbs, Richard A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Goswami, ChandanUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Grapputo, AlessandroUNSPECIFIEDorcid.org/0000-0001-9255-4294UNSPECIFIED
Gruden, KristinaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Grynberg, MarcinUNSPECIFIEDorcid.org/0000-0003-1887-7209UNSPECIFIED
Henrissat, BernardUNSPECIFIEDorcid.org/0000-0002-3434-8588UNSPECIFIED
Jennings, Emily C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Jones, Jeffery W.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Kalsi, MeghaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Khan, Sher A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Kumar, AbhishekUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Li, FeiUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Lombard, VincentUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ma, XingzhouUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Martynov, AlexanderUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Miller, Nicholas J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Mitchell, Robert F.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Munoz-Torres, MonicaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Muszewska, AnnaUNSPECIFIEDorcid.org/0000-0002-4578-844XUNSPECIFIED
Oppert, BrendaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Palli, Subba ReddyUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Panfilio, Kristen A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Pauchet, YannickUNSPECIFIEDorcid.org/0000-0002-2918-8946UNSPECIFIED
Perkin, Lindsey C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Petek, MarkoUNSPECIFIEDorcid.org/0000-0003-3644-7827UNSPECIFIED
Poelchau, Monica F.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Record, EricUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Rinehart, Joseph P.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Robertson, Hugh M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Rosendale, Andrew J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ruiz-Arroyo, Victor M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Smagghe, GuyUNSPECIFIEDorcid.org/0000-0001-8334-3313UNSPECIFIED
Szendrei, ZsofiaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Thomas, Gregg W. C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Torson, Alex S.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Jentzsch, Iris M. VargasUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Weirauch, Matthew T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Yates, Ashley D. T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Yocum, George D.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Yoon, June-SunUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Richards, StephenUNSPECIFIEDorcid.org/0000-0001-8959-5466UNSPECIFIED
URN: urn:nbn:de:hbz:38-198399
DOI: 10.1038/s41598-018-20154-1
Journal or Publication Title: Sci Rep
Volume: 8
Date: 2018
Publisher: NATURE PUBLISHING GROUP
Place of Publication: LONDON
ISSN: 2045-2322
Language: English
Faculty: Faculty of Mathematics and Natural Sciences
Divisions: Faculty of Mathematics and Natural Sciences > Department of Biology > Zoologisches Institut
Subjects: no entry
Uncontrolled Keywords:
KeywordsLanguage
S-TRANSFERASE GENES; RNA-INTERFERENCE; INSECTICIDE RESISTANCE; GEOGRAPHIC POPULATIONS; TRANSPOSABLE ELEMENTS; MOLECULAR EVOLUTION; EXPRESSION PROFILES; DIGESTIVE PROTEASES; READ ALIGNMENT; FRUIT-FLYMultiple languages
Multidisciplinary SciencesMultiple languages
Refereed: Yes
URI: http://kups.ub.uni-koeln.de/id/eprint/19839

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