Universität zu Köln

Sharma, Ranu, Rawat, Vimal and Suresh, C. G. (2017). Genome-wide identification and tissue-specific expression analysis of nucleotide binding site-leucine rich repeat gene family in Cicer arietinum (kabuli chickpea). Genom. Data, 14. S. 24 - 32. AMSTERDAM: ELSEVIER. ISSN 2213-5960

Full text not available from this repository.

Abstract

The nucleotide binding site-leucine rich repeat (NBS-LRR) proteins play an important role in the defense mechanisms against pathogens. Using bioinformatics approach, we identified and annotated 104 NBS-LRR genes in chickpea. Phylogenetic analysis points to their diversification into two families namely TIR-NBS-LRR and nonTIR-NBS-LRR. Gene architecture revealed intron gain/loss events in this resistance gene family during their independent evolution into two families. Comparative genomics analysis elucidated its evolutionary relationship with other fabaceae species. Around 50% NBS-LRRs reside in macro-syntenic blocks underlining positional conservation along with sequence conservation of NBS-LRR genes in chickpea. Transcriptome sequencing data provided evidence for their transcription and tissue-specific expression. Four cis-regulatory elements namely WBOX, DRE, CBF, and GCC boxes, that commonly occur in resistance genes, were present in the promoter regions of these genes. Further, the findings will provide a strong background to use candidate disease resistance NBS-encoding genes and identify their specific roles in chickpea.

Item Type:	Journal Article
Creators:	Creators Email ORCID ORCID Put Code Sharma, Ranu UNSPECIFIED UNSPECIFIED UNSPECIFIED Rawat, Vimal UNSPECIFIED UNSPECIFIED UNSPECIFIED Suresh, C. G. UNSPECIFIED UNSPECIFIED UNSPECIFIED
URN:	urn:nbn:de:hbz:38-209765
DOI:	10.1016/j.gdata.2017.08.004
Journal or Publication Title:	Genom. Data
Volume:	14
Page Range:	S. 24 - 32
Date:	2017
Publisher:	ELSEVIER
Place of Publication:	AMSTERDAM
ISSN:	2213-5960
Language:	English
Faculty:	Unspecified
Divisions:	Unspecified
Subjects:	no entry
Uncontrolled Keywords:	Keywords Language DISEASE RESISTANCE GENES; NBS-LRR PROTEINS; ENCODING GENES; ARABIDOPSIS; TIR; REVEALS; TRANSCRIPTION; EXPANSION; ALIGNMENT; ETHYLENE Multiple languages Genetics & Heredity Multiple languages
Refereed:	Yes
URI:	http://kups.ub.uni-koeln.de/id/eprint/20976