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Journal Article
Charmpi, Konstantina, Guo, Tiannan, Zhong, Qing, Wagner, Ulrich, Sun, Rui, Toussaint, Nora C., Fritz, Christine E., Yuan, Chunhui, Chen, Hao, Rupp, Niels J., Christiansen, Ailsa, Rutishauser, Dorothea, Ruschoff, Jan H., Fankhauser, Christian, Saba, Karim, Poyet, Cedric, Hermanns, Thomas, Oehl, Kathrin, Moore, Ariane L., Beisel, Christian, Calzone, Laurence, Martignetti, Loredana, Zhang, Qiushi, Zhu, Yi, Martinez, Maria Rodriguez, Manica, Matteo, Haffner, Michael C., Aebersold, Ruedi, Wild, Peter J. and Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biol., 21 (1). LONDON: BMC. ISSN 1474-760X
Grossbach, Jan ORCID: 0000-0002-9394-5665, Gillet, Ludovic, Clement-Ziza, Mathieu, Schmalohr, Corinna L., Schubert, Olga T., Schuetter, Maximilian, Mawer, Julia S. P., Barnes, Christopher A., Bludau, Isabell, Weith, Matthias
ORCID: 0000-0003-0804-4262, Tessarz, Peter
ORCID: 0000-0002-6953-9835, Graef, Martin, Aebersold, Ruedi and Beyer, Andreas
ORCID: 0000-0002-3891-2123
(2022).
The impact of genomic variation on protein phosphorylation states and regulatory networks.
Mol. Syst. Biol., 18 (5).
HOBOKEN:
WILEY.
ISSN 1744-4292
Guo, Tiannan ORCID: 0000-0003-3869-7651, Li, Li, Zhong, Qing
ORCID: 0000-0002-5340-301X, Rupp, Niels J., Charmpi, Konstantina, Wong, Christine E., Wagner, Ulrich, Rueschoff, Jan H., Jochum, Wolfram, Fankhauser, Christian Daniel, Saba, Karim, Poyet, Cedric, Wild, Peter J., Aebersold, Ruedi and Beyer, Andreas
ORCID: 0000-0002-3891-2123
(2018).
Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers.
Life Sci. Alliance, 1 (2).
COLD SPRING HARBOR:
LIFE SCIENCE ALLIANCE LLC.
ISSN 2575-1077
Kasinath, Vignesh ORCID: 0000-0003-2686-0546, Beck, Curtis
ORCID: 0000-0002-6674-9802, Sauer, Paul, Poepsel, Simon
ORCID: 0000-0002-8304-4062, Kosmatka, Jennifer
ORCID: 0000-0001-5337-3298, Faini, Marco
ORCID: 0000-0001-8131-7648, Toso, Daniel, Aebersold, Ruedi
ORCID: 0000-0002-9576-3267 and Nogales, Eva
(2021).
JARID2 and AEBP2 regulate PRC2 in the presence of H2AK119ub1 and other histone modifications.
Science, 371 (6527).
S. 362 - 397.
WASHINGTON:
AMER ASSOC ADVANCEMENT SCIENCE.
ISSN 1095-9203
Liu, Yansheng ORCID: 0000-0002-2626-3912, Beyer, Andreas
ORCID: 0000-0002-3891-2123 and Aebersold, Ruedi
(2016).
On the Dependency of Cellular Protein Levels on mRNA Abundance.
Cell, 165 (3).
S. 535 - 551.
CAMBRIDGE:
CELL PRESS.
ISSN 1097-4172
Liu, Yansheng ORCID: 0000-0002-2626-3912, Borel, Christelle, Li, Li, Mueller, Torsten, Williams, Evan G., Germain, Pierre-Luc, Buljan, Marija, Sajic, Tatjana, Boersema, Paul J., Shao, Wenguang, Faini, Marco, Testa, Giuseppe
ORCID: 0000-0002-9104-0918, Beyer, Andreas
ORCID: 0000-0002-3891-2123, Antonarakis, Stylianos E. and Aebersold, Ruedi
ORCID: 0000-0002-9576-3267
(2017).
Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.
Nat. Commun., 8.
LONDON:
NATURE PUBLISHING GROUP.
ISSN 2041-1723
Shao, Wenguang, Guo, Tiannan ORCID: 0000-0003-3869-7651, Toussaint, Nora C., Xue, Peng, Wagner, Ulrich, Li, Li, Charmpi, Konstantina, Zhu, Yi, Wu, Jianmin
ORCID: 0000-0002-8876-128X, Buljan, Marija, Sun, Rui, Rutishauser, Dorothea
ORCID: 0000-0003-2303-103X, Hermanns, Thomas, Fankhauser, Christian Daniel, Poyet, Cedric, Ljubicic, Jelena, Rupp, Niels, Ruschoff, Jan H., Zhong, Qing
ORCID: 0000-0002-5340-301X, Beyer, Andreas
ORCID: 0000-0002-3891-2123, Ji, Jiafu, Collins, Ben C., Liu, Yansheng, Ratsch, Gunnar, Wild, Peter J. and Aebersold, Ruedi
(2019).
Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.
Nat. Commun., 10.
LONDON:
NATURE PUBLISHING GROUP.
ISSN 2041-1723