Universität zu Köln

2022

Dewald, Felix, Suarez, Isabelle, Johnen, Ronja ORCID: 0000-0002-5150-5266, Grossbach, Jan ORCID: 0000-0002-9394-5665, Moran-Tovar, Roberto ORCID: 0000-0002-6291-9376, Steger, Gertrud, Joachim, Alexander, Rubio, Gibran Horemheb, Fries, Mira, Behr, Florian, Kley, Joao, Lingnau, Andreas, Kretschmer, Alina, Gude, Carina, Beazes-Flores, Guadelupe, del Valle, David Laveaga, Roblero-Hernandez, Alberto, Magana-Cerino, Jesus, Hernandez, Adriana Torres, Ruiz-Quinones, Jesus, Schega, Konstantin, Linne, Viktoria, Junker, Lena, Wunsch, Marie ORCID: 0000-0002-6570-1831, Heger, Eva, Knops, Elena, Di Cristanziano, Veronica, Meyer, Meike ORCID: 0000-0002-5708-3981, Huenseler, Christoph, Weber, Lutz T., Lueers, Jan-Christoffer, Quade, Gustav, Wisplinghoff, Hilmar, Tiemann, Carsten, Zotz, Rainer, Jomaa, Hassan, Pranada, Arthur, Herzum, Ileana, Cullen, Paul, Schmitz, Franz-Josef, Philipsen, Paul, Kirchner, Georg, Knabbe, Cornelius, Hellmich, Martin, Buess, Michael, Wolff, Anna, Kossow, Annelene, Niessen, Johannes, Jeworutzki, Sebastian ORCID: 0000-0002-2671-5253, Schraepler, Joerg-Peter, Laessig, Michael, Doetsch, Joerg, Faetkenheuer, Gerd, Kaiser, Rolf ORCID: 0000-0002-2640-2548, Beyer, Andreas, Rybniker, Jan and Klein, Florian ORCID: 0000-0003-1376-1792 (2022). Effective high-throughput RT-qPCR screening for SARS-CoV-2 infections in children. Nat. Commun., 13 (1). BERLIN: NATURE PORTFOLIO. ISSN 2041-1723

Fraser, Helen C., Kuan, Valerie, Johnen, Ronja, Zwierzyna, Magdalena, Hingorani, Aroon D., Beyer, Andreas ORCID: 0000-0002-3891-2123 and Partridge, Linda ORCID: 0000-0001-9615-0094 (2022). Biological mechanisms of aging predict age-related disease co-occurrence in patients. Aging Cell, 21 (4). HOBOKEN: WILEY. ISSN 1474-9726

Grossbach, Jan ORCID: 0000-0002-9394-5665, Gillet, Ludovic, Clement-Ziza, Mathieu, Schmalohr, Corinna L., Schubert, Olga T., Schuetter, Maximilian, Mawer, Julia S. P., Barnes, Christopher A., Bludau, Isabell, Weith, Matthias ORCID: 0000-0003-0804-4262, Tessarz, Peter ORCID: 0000-0002-6953-9835, Graef, Martin, Aebersold, Ruedi and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2022). The impact of genomic variation on protein phosphorylation states and regulatory networks. Mol. Syst. Biol., 18 (5). HOBOKEN: WILEY. ISSN 1744-4292

Huth, Michelle, Santini, Laura, Galimberti, Elena, Ramesmayer, Julia, Titz-Teixeira, Fabian, Sehlke, Robert, Oberhuemer, Michael ORCID: 0000-0003-2273-2782, Stummer, Sarah, Herzog, Veronika, Garmhausen, Marius, Romeike, Merrit ORCID: 0000-0002-5890-2213, Chugunova, Anastasia, Leesch, Friederike, Holcik, Laurenz ORCID: 0000-0001-7855-3770, Weipoltshammer, Klara, Lackner, Andreas, Schoefer, Christian, von Haeseler, Arndt ORCID: 0000-0002-3366-4458, Buecker, Christa, Pauli, Andrea, Ameres, Stefan L., Smith, Austin, Beyer, Andreas and Leeb, Martin (2022). NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation. Genes Dev., 36 (5-6). S. 348 - 368. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT. ISSN 1549-5477

Leote, Ana Carolina ORCID: 0000-0003-0879-328X, Wu, Xiaohui ORCID: 0000-0003-0356-7785 and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2022). Regulatory network-based imputation of dropouts in single-cell RNA sequencing data. PLoS Comput. Biol., 18 (2). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

Mackmull, Marie-Therese ORCID: 0000-0003-2928-1144, Nagel, Luise ORCID: 0000-0001-8844-7234, Sesterhenn, Fabian, Muntel, Jan ORCID: 0000-0003-2320-5829, Grossbach, Jan ORCID: 0000-0002-9394-5665, Stalder, Patrick, Bruderer, Roland, Reiter, Lukas, van de Berg, Wilma D. J., de Souza, Natalie, Beyer, Andreas and Picotti, Paola (2022). Global, in situ analysis of the structural proteome in individuals with Parkinson's disease to identify a new class of biomarker. Nat. Struct. Mol. Biol., 29 (10). S. 978 - 1004. BERLIN: NATURE PORTFOLIO. ISSN 1545-9985

Steuernagel, Lukas ORCID: 0000-0003-0043-1436, Lam, Brian Y. H., Klemm, Paul ORCID: 0000-0002-5985-1737, Dowsett, Georgina K. C., Bauder, Corinna A., Tadross, John A., Hitschfeld, Tamara Sotelo, Martin, Almudena del Rio, Chen, Weiyi, de Solis, Alain J., Fenselau, Henning, Davidsen, Peter, Cimino, Irene, Kohnke, Sara N., Rimmington, Debra, Coll, Anthony P., Beyer, Andreas, Yeo, Giles S. H. and Bruening, Jens C. (2022). HypoMap-a unified single-cell gene expression atlas of the murine hypothalamus. Nat. Metab., 4 (10). S. 1402 - 1434. BERLIN: NATURE PORTFOLIO. ISSN 2522-5812

2021

Cappelletti, Valentina, Hauser, Thomas, Piazza, Ilaria ORCID: 0000-0001-5895-6134, Pepelnjak, Monika, Malinovska, Liliana ORCID: 0000-0002-8514-4569, Fuhrer, Tobias, Li, Yaozong ORCID: 0000-0002-5796-2644, Doerig, Christian, Boersema, Paul, Gillet, Ludovic, Grossbach, Jan, Dugourd, Aurelien, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976, Beyer, Andreas ORCID: 0000-0002-3891-2123, Zamboni, Nicola ORCID: 0000-0003-1271-1021, Caflisch, Amedeo, de Souza, Natalie and Picotti, Paola ORCID: 0000-0002-4109-3552 (2021). Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ. Cell, 184 (2). S. 545 - 582. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

Charmpi, Konstantina, Chokkalingam, Manopriya, Johnen, Ronja ORCID: 0000-0002-5150-5266 and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2021). Optimizing network propagation for multi-omics data integration. PLoS Comput. Biol., 17 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

Lackner, Andreas ORCID: 0000-0003-1168-7947, Sehlke, Robert, Garmhausen, Marius ORCID: 0000-0002-8617-388X, Giuseppe Stirparo, Giuliano, Huth, Michelle ORCID: 0000-0002-1152-9140, Titz-Teixeira, Fabian ORCID: 0000-0002-7007-9039, van Der Lelij, Petra, Ramesmayer, Julia, Thomas, Henry F., Ralser, Meryem, Santini, Laura, Galimberti, Elena, Sarov, Mihail, Stewart, A. Francis, Smith, Austin, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Leeb, Martin ORCID: 0000-0001-5114-4782 (2021). Cooperative genetic networks drive embryonic stem cell transition from naive to formative pluripotency. Embo J., 40 (8). HOBOKEN: WILEY. ISSN 1460-2075

Santini, Laura, Halbritter, Florian ORCID: 0000-0003-2452-4784, Titz-Teixeira, Fabian ORCID: 0000-0002-7007-9039, Suzuki, Toru ORCID: 0000-0002-0174-0794, Asami, Maki ORCID: 0000-0003-3523-0984, Ma, Xiaoyan, Ramesmayer, Julia, Lackner, Andreas ORCID: 0000-0003-1168-7947, Warr, Nick ORCID: 0000-0003-0767-1360, Pauler, Florian, Hippenmeyer, Simon ORCID: 0000-0003-2279-1061, Laue, Ernest, Farlik, Matthias, Bock, Christoph ORCID: 0000-0001-6091-3088, Beyer, Andreas, Perry, Anthony C. F. and Leeb, Martin ORCID: 0000-0001-5114-4782 (2021). Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3. Nat. Commun., 12 (1). BERLIN: NATURE RESEARCH. ISSN 2041-1723

Tain, Luke Stephen, Sehlke, Robert, Meilenbrock, Ralf Leslie, Leech, Thomas, Paulitz, Jonathan, Chokkalingam, Manopriya, Nagaraj, Nagarjuna, Groenke, Sebastian, Froehlich, Jenny, Atanassov, Ilian ORCID: 0000-0001-8259-2545, Mann, Matthias, Beyer, Andreas and Partridge, Linda (2021). Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila. eLife, 10. CAMBRIDGE: eLIFE SCIENCES PUBL LTD. ISSN 2050-084X

Tognetti, Marco, Gabor, Attila, Yang, Mi, Cappelletti, Valentina, Windhager, Jonas ORCID: 0000-0002-2111-5291, Rueda, Oscar M., Charmpi, Konstantina, Esmaeilishirazifard, Elham, Bruna, Alejandra ORCID: 0000-0003-1214-9665, de Souza, Natalie, Caldas, Carlos, Beyer, Andreas, Picotti, Paola, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976 and Bodenmiller, Bernd (2021). Deciphering the signaling network of breast cancer improves drug sensitivity prediction. Cell Syst., 12 (5). S. 401 - 431. CAMBRIDGE: CELL PRESS. ISSN 2405-4720

2020

Charmpi, Konstantina, Guo, Tiannan, Zhong, Qing, Wagner, Ulrich, Sun, Rui, Toussaint, Nora C., Fritz, Christine E., Yuan, Chunhui, Chen, Hao, Rupp, Niels J., Christiansen, Ailsa, Rutishauser, Dorothea, Ruschoff, Jan H., Fankhauser, Christian, Saba, Karim, Poyet, Cedric, Hermanns, Thomas, Oehl, Kathrin, Moore, Ariane L., Beisel, Christian, Calzone, Laurence, Martignetti, Loredana, Zhang, Qiushi, Zhu, Yi, Martinez, Maria Rodriguez, Manica, Matteo, Haffner, Michael C., Aebersold, Ruedi, Wild, Peter J. and Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biol., 21 (1). LONDON: BMC. ISSN 1474-760X

Johnsen, Marc, Kubacki, Torsten, Yeroslaviz, Assa, Spaeth, Martin Richard, Moersdorf, Jannis, Gobel, Heike, Bohl, Katrin, Ignarski, Michael ORCID: 0000-0001-6057-7694, Meharg, Caroline, Habermann, Bianca ORCID: 0000-0002-2457-7504, Altmueller, Janine, Beyer, Andreas ORCID: 0000-0002-3891-2123, Benzing, Thomas, Schermer, Bernhard, Burst, Volker and Mueller, Roman-Ulrich (2020). The Integrated RNA Landscape of Renal Preconditioning against Ischemia-Reperfusion Injury. J. Am. Soc. Nephrol., 31 (4). S. 716 - 731. WASHINGTON: AMER SOC NEPHROLOGY. ISSN 1533-3450

Kamrad, Stephan ORCID: 0000-0002-5957-4661, Grossbach, Jan, Rodriguez-Lopez, Maria, Muelleder, Michael, Townsend, StJohn, Cappelletti, Valentina, Stojanovski, Gorjan, Correia-Melo, Clara, Picotti, Paola, Beyer, Andreas ORCID: 0000-0002-3891-2123, Ralser, Markus ORCID: 0000-0001-9535-7413 and Bahler, Jurg ORCID: 0000-0003-4036-1532 (2020). Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance. Mol. Syst. Biol., 16 (4). HOBOKEN: WILEY. ISSN 1744-4292

2019

Lapin, Dmitry ORCID: 0000-0001-9591-3950, Kovacova, Viera, Sun, Xinhua, Dongus, Joram A., Bhandari, Deepak ORCID: 0000-0002-7666-6410, von Born, Patrick, Bautor, Jaqueline, Guarneri, Nina ORCID: 0000-0002-0399-9230, Rzemieniewski, Jakub ORCID: 0000-0001-7274-383X, Stuttmann, Johannes ORCID: 0000-0002-6207-094X, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Parker, Jane E. (2019). A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors. Plant Cell, 31 (10). S. 2430 - 2456. ROCKVILLE: AMER SOC PLANT BIOLOGISTS. ISSN 1532-298X

Shao, Wenguang, Guo, Tiannan ORCID: 0000-0003-3869-7651, Toussaint, Nora C., Xue, Peng, Wagner, Ulrich, Li, Li, Charmpi, Konstantina, Zhu, Yi, Wu, Jianmin ORCID: 0000-0002-8876-128X, Buljan, Marija, Sun, Rui, Rutishauser, Dorothea ORCID: 0000-0003-2303-103X, Hermanns, Thomas, Fankhauser, Christian Daniel, Poyet, Cedric, Ljubicic, Jelena, Rupp, Niels, Ruschoff, Jan H., Zhong, Qing ORCID: 0000-0002-5340-301X, Beyer, Andreas ORCID: 0000-0002-3891-2123, Ji, Jiafu, Collins, Ben C., Liu, Yansheng, Ratsch, Gunnar, Wild, Peter J. and Aebersold, Ruedi (2019). Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins. Nat. Commun., 10. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Soste, Martin, Charmpi, Konstantina, Lampert, Fabienne, Gerez, Juan Atilio, van Oostrum, Marc ORCID: 0000-0001-8747-9787, Malinovska, Liliana, Boersema, Paul Jonathan, Prymaczok, Natalia Cecilia, Riek, Roland, Peter, Matthias, Vanni, Stefano ORCID: 0000-0003-2146-1140, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Picotti, Paola (2019). Proteomics-Based Monitoring of Pathway Activity Reveals that Blocking Diacylglycerol Biosynthesis Rescues from Alpha-Synuclein Toxicity. Cell Syst., 9 (3). S. 309 - 329. CAMBRIDGE: CELL PRESS. ISSN 2405-4720

Spaeth, Martin R., Bartram, Malte P., Palacio-Escat, Nicolas ORCID: 0000-0002-7022-1437, Hoyer, K. Johanna R., Debes, Cedric, Demir, Fatih ORCID: 0000-0002-5744-0205, Schroeter, Christina B., Mandel, Amrei M., Grundmann, Franziska, Ciarimboli, Giuliano, Beyer, Andreas ORCID: 0000-0002-3891-2123, Kizhakkedathu, Jayachandran N., Brodesser, Susanne, Goebel, Heike, Becker, Jan U., Benzing, Thomas, Schermer, Bernhard ORCID: 0000-0002-5194-9000, Hoehne, Martin, Burst, Volker, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976, Huesgen, Pitter F., Mueller, Roman-Ulrich and Rinschen, Markus M. (2019). The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury. Kidney Int., 95 (2). S. 333 - 350. NEW YORK: ELSEVIER SCIENCE INC. ISSN 1523-1755

2018

Guo, Tiannan ORCID: 0000-0003-3869-7651, Li, Li, Zhong, Qing ORCID: 0000-0002-5340-301X, Rupp, Niels J., Charmpi, Konstantina, Wong, Christine E., Wagner, Ulrich, Rueschoff, Jan H., Jochum, Wolfram, Fankhauser, Christian Daniel, Saba, Karim, Poyet, Cedric, Wild, Peter J., Aebersold, Ruedi and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2018). Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers. Life Sci. Alliance, 1 (2). COLD SPRING HARBOR: LIFE SCIENCE ALLIANCE LLC. ISSN 2575-1077

Hahn, Oliver ORCID: 0000-0001-9015-4545, Stubbs, Thomas M., Reik, Wolf ORCID: 0000-0003-0216-9881, Groenke, Sebastian, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Partridge, Linda ORCID: 0000-0001-9615-0094 (2018). Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity. PLoS Genet., 14 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7404

Hoehne, Martin, Frese, Christian K., Grahammer, Florian, Dafinger, Claudia, Ciarimboli, Giuliano, Butt, Linus, Binz, Julia, Hackl, Matthias J., Rahmatollahi, Mahdieh, Kann, Martin, Schneider, Simon, Altintas, Mehmet M., Schermer, Bernhard ORCID: 0000-0002-5194-9000, Reinheckel, Thomas ORCID: 0000-0001-9866-9105, Goebel, Heike, Reiser, Jochen, Huber, Tobias B. ORCID: 0000-0001-7175-5062, Kramann, Rafael, Seeger-Nukpezah, Tamina, Liebau, Max C., Beck, Bodo B., Benzing, Thomas, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Rinschen, Markus M. (2018). Single-nephron proteomes connect morphology and function in proteinuric kidney disease. Kidney Int., 93 (6). S. 1308 - 1320. NEW YORK: ELSEVIER SCIENCE INC. ISSN 1523-1755

Seifert, Michael and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2018). regNet: an R package for network-based propagation of gene expression alterations. Bioinformatics, 34 (2). S. 308 - 312. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

2017

Christodoulou, Eleni G., Yang, Hai, Lademann, Franziska, Pilarsky, Christian ORCID: 0000-0002-7968-3283, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Schroeder, Michael (2017). Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens. Oncotarget, 8 (21). S. 34283 - 34298. ORCHARD PARK: IMPACT JOURNALS LLC. ISSN 1949-2553

Hahn, Oliver ORCID: 0000-0001-9015-4545, Groenke, Sebastian, Stubbs, Thomas M., Ficz, Gabriella, Hendrich, Oliver, Krueger, Felix ORCID: 0000-0002-5513-3324, Andrews, Simon, Zhang, Qifeng, Wakelam, Michael J., Beyer, Andreas ORCID: 0000-0002-3891-2123, Reik, Wolf and Partridge, Linda ORCID: 0000-0001-9615-0094 (2017). Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism. Genome Biol., 18. LONDON: BMC. ISSN 1474-760X

Liu, Yansheng ORCID: 0000-0002-2626-3912, Borel, Christelle, Li, Li, Mueller, Torsten, Williams, Evan G., Germain, Pierre-Luc, Buljan, Marija, Sajic, Tatjana, Boersema, Paul J., Shao, Wenguang, Faini, Marco, Testa, Giuseppe ORCID: 0000-0002-9104-0918, Beyer, Andreas ORCID: 0000-0002-3891-2123, Antonarakis, Stylianos E. and Aebersold, Ruedi ORCID: 0000-0002-9576-3267 (2017). Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells. Nat. Commun., 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Mackmull, Marie-Therese ORCID: 0000-0003-2928-1144, Klaus, Bernd, Heinze, Ivonne, Chokkalingam, Manopriya, Beyer, Andreas ORCID: 0000-0002-3891-2123, Russell, Robert B., Ori, Alessandro ORCID: 0000-0002-3046-0871 and Beck, Martin ORCID: 0000-0002-7397-1321 (2017). Landscape of nuclear transport receptor cargo specificity. Mol. Syst. Biol., 13 (12). HOBOKEN: WILEY. ISSN 1744-4292

Tain, Luke S., Sehlke, Robert, Jain, Chirag, Chokkalingam, Manopriya, Nagaraj, Nagarjuna, Essers, Paul, Rassner, Mark, Groenke, Sebastian, Froelich, Jenny, Dieterich, Christoph, Mann, Matthias, Alic, Nazif ORCID: 0000-0003-0356-6600, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Partridge, Linda ORCID: 0000-0001-9615-0094 (2017). A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. Mol. Syst. Biol., 13 (9). HOBOKEN: WILEY. ISSN 1744-4292

2016

Gatto, Laurent ORCID: 0000-0002-1520-2268, Hansen, Kasper D., Hoopmann, Michael R., Hermjakob, Henning ORCID: 0000-0001-8479-0262, Kohlbacher, Oliver and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2016). Testing and Validation of Computational Methods for Mass Spectrometry. J. Proteome Res., 15 (3). S. 809 - 815. WASHINGTON: AMER CHEMICAL SOC. ISSN 1535-3907

He, Fei, Arce, Agustin L., Schmitz, Gregor, Koornneef, Maarten ORCID: 0000-0002-7759-4869, Novikova, Polina, Beyer, Andreas ORCID: 0000-0002-3891-2123 and de Meaux, Juliette ORCID: 0000-0002-2942-4750 (2016). The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus. Mol. Biol. Evol., 33 (8). S. 2088 - 2102. OXFORD: OXFORD UNIV PRESS. ISSN 1537-1719

Liu, Yansheng ORCID: 0000-0002-2626-3912, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Aebersold, Ruedi (2016). On the Dependency of Cellular Protein Levels on mRNA Abundance. Cell, 165 (3). S. 535 - 551. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

Seifert, Michael, Friedrich, Betty and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2016). Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis. Genome Biol., 17. LONDON: BMC. ISSN 1474-760X

2015

Eduati, Federica ORCID: 0000-0002-7822-3867, Mangravite, Lara M., Wang, Tao, Tang, Hao, Bare, J. Christopher ORCID: 0000-0003-1006-1491, Huang, Ruili, Norman, Thea, Kellen, Mike, Menden, Michael P., Yang, Jichen, Zhan, Xiaowei, Zhong, Rui, Xiao, Guanghua, Xia, Menghang, Abdo, Nour, Kosyk, Oksana, Friend, Stephen, Dearry, Allen, Simeonov, Anton, Tice, Raymond R., Rusyn, Ivan ORCID: 0000-0001-9340-7384, Wright, Fred A., Stolovitzky, Gustavo, Xie, Yang, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976, Aittokallio, Tero ORCID: 0000-0002-0886-9769, Alaimo, Salvatore, Amadoz, Alicia ORCID: 0000-0003-3915-0404, Ammad-ud-din, Muhammad, Azencott, Chloe-Agathe ORCID: 0000-0003-1003-301X, Bacardit, Jaume ORCID: 0000-0002-2692-7205, Barron, Pelham, Bernard, Elsa ORCID: 0000-0002-2057-7187, Beyer, Andreas ORCID: 0000-0002-3891-2123, Bin, Shao, van Boemmel, Alena, Borgwardt, Karsten, Brys, April M., Caffrey, Brian, Chang, Jeffrey, Chang, Jungsoo, Chheda, Himanshu, Christodoulou, Eleni G., Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X, Cohen, Trevor, Cowherd, Marianne ORCID: 0000-0002-3165-4504, Demeyer, Sofie ORCID: 0000-0002-8193-5734, Dopazo, Joaquin, Elhard, Joel D., Falcao, Andre O. ORCID: 0000-0002-3588-8746, Ferro, Alfredo, Friedenberg, David A., Giugno, Rosalba ORCID: 0000-0001-9843-7638, Gong, Yunguo, Gorospe, Jenni W., Granville, Courtney A., Grimm, Dominik, Heinig, Matthias ORCID: 0000-0002-5612-1720, Hernansaiz, Rosa D., Hintsanen, Petteri, Hochreiter, Sepp ORCID: 0000-0001-7449-2528, Huang, Liang-Chin, Huska, Matthew, Jaiswal, Alok, Jiao, Yunlong, Kaski, Samuel ORCID: 0000-0003-1925-9154, Kaur, Ismeet, Khan, Suleiman Ali, Klambauer, Guenter, Krasnogor, Natalio, Kuhn, Michael, Kursa, Miron Bartosz, Kutum, Rintu, Lazzarini, Nicola, Lee, Inhan, Leung, Michael K. K., Lim, Weng Khong ORCID: 0000-0003-4391-1130, Liu, Charlie, Lopez, Felipe Llinares, Mammana, Alessandro, Mayr, Andreas, Michoel, Tom ORCID: 0000-0003-4749-4725, Mongiovi, Misael, Moore, Jonathan D., Mpindi, John-Patrick, Narasimhan, Ravi, Opiyo, Stephen O., Pandey, Gaurav, Peabody, Andrea L., Perner, Juliane, Poso, Antti ORCID: 0000-0003-4196-4204, Pulvirenti, Alfredo ORCID: 0000-0002-9764-0295, Rawlik, Konrad, Reinhardt, Susanne, Riffle, Carol G., Ruderfer, Douglas, Sander, Aaron J., Savage, Richard S., Scornet, Erwan, Sebastian-Leon, Patricia, Sharan, Roded, Simon-Gabriel, Carl Johann, Stoven, Veronique, Sun, Jingchun, Tang, Jing ORCID: 0000-0001-7480-7710, Teixeira, Ana L., Tenesa, Albert, Vert, Jean-Philippe ORCID: 0000-0001-9510-8441, Vingron, Martin, Walter, Thomas ORCID: 0000-0001-7419-7879, Wennerberg, Krister, Whalen, Sean, Wisniewska, Zofia, Wu, Yonghui, Xu, Hua, Zhang, Shihua, Zhao, Junfei and Zheng, W. Jim (2015). Prediction of human population responses to toxic compounds by a collaborative competition. Nat. Biotechnol., 33 (9). S. 933 - 944. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1696

Hass, Johanna, Walton, Esther ORCID: 0000-0002-0935-2200, Wright, Carrie ORCID: 0000-0003-1325-6067, Beyer, Andreas ORCID: 0000-0002-3891-2123, Scholz, Markus, Turner, Jessica, Liu, Jingyu ORCID: 0000-0002-1724-7523, Smolka, Michael N., Roessner, Veit, Sponheim, Scott R., Gollub, Randy L. ORCID: 0000-0002-9434-4044, Calhoun, Vince D. and Ehrlich, Stefan ORCID: 0000-0003-2132-4445 (2015). Associations between DNA methylation and schizophrenia-related intermediate phenotypes - A gene set enrichment analysis. Prog. Neuro-Psychopharmacol. Biol. Psychiatry, 59. S. 31 - 40. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD. ISSN 1878-4216

Stephan, Johannes ORCID: 0000-0002-1279-2477, Stegle, Oliver ORCID: 0000-0002-8818-7193 and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2015). A random forest approach to capture genetic effects in the presence of population structure. Nat. Commun., 6. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Valenzano, Dario Riccardo ORCID: 0000-0002-8761-8289, Benayoun, Berenice A., Singh, Param Priya, Zhang, Elisa, Etter, Paul D., Hu, Chi-Kuo, Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X, Willemsen, David, Cui, Rongfeng ORCID: 0000-0002-8146-6958, Harel, Itamar ORCID: 0000-0001-9749-8279, Machado, Ben E., Yee, Muh-Ching, Sharp, Sabrina C., Bustamante, Carlos D. ORCID: 0000-0002-4187-7920, Beyer, Andreas ORCID: 0000-0002-3891-2123, Johnson, Eric A. and Brunet, Anne (2015). The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan. Cell, 163 (6). S. 1539 - 1555. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

2014

Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X, Marsellach, Francesc X., Codlin, Sandra, Papadakis, Manos A., Reinhardt, Susanne, Rodriguez-Lopez, Maria ORCID: 0000-0002-2066-0589, Martin, Stuart, Marguerat, Samuel ORCID: 0000-0002-2402-3165, Schmidt, Alexander, Lee, Eunhye, Workman, Christopher T., Baehler, Juerg and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2014). Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Mol. Syst. Biol., 10 (11). HOBOKEN: WILEY. ISSN 1744-4292

Guenal-Sadik, Gamze, Paszkowski-Rogacz, Maciej, Singaravelu, Kalaimathy, Beyer, Andreas ORCID: 0000-0002-3891-2123, Buchholz, Frank ORCID: 0000-0002-4577-3344 and Jessberger, Rolf (2014). Stage-Specific Binding Profiles of Cohesin in Resting and Activated B Lymphocytes Suggest a Role for Cohesin in Immunoglobulin Class Switching and Maturation. PLoS One, 9 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Kuhn, Michael ORCID: 0000-0002-2841-872X, Hyman, Anthony A. and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2014). Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome. PLoS Comput. Biol., 10 (6). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

Simeone, Angela, Marsico, Giovanni, Collinet, Claudio ORCID: 0000-0002-8532-2601, Galvez, Thierry, Kalaidzidis, Yannis ORCID: 0000-0002-6137-1193, Zerial, Marino and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2014). Revealing Molecular Mechanisms by Integrating High-Dimensional Functional Screens with Protein Interaction Data. PLoS Comput. Biol., 10 (9). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

2013

Sikora-Wohlfeld, Weronika, Ackermann, Marit, Christodoulou, Eleni G., Singaravelu, Kalaimathy and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2013). Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data. PLoS Comput. Biol., 9 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358