Universität zu Köln

Journal Article

Cainelli, Renato, de Haan, Myriam, Meyer, Marianne, Bonkowski, Michael and Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907 (2020). Phylogeny of Physarida (Amoebozoa, Myxogastria) Based on the Small-Subunit Ribosomal RNA Gene, Redefinition of Physarum pusillum s. str. and Reinstatement of P. gravidum Morgan. J. Eukaryot. Microbiol., 67 (3). S. 327 - 337. HOBOKEN: WILEY. ISSN 1550-7408

Clissmann, Fionn, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Hoppe, Bjoern, Krueger, Dirk, Kahl, Tiemo, Unterseher, Martin and Schnittler, Martin (2015). First insight into dead wood protistan diversity: a molecular sampling of bright-spored Myxomycetes (Amoebozoa, slime-moulds) in decaying beech logs. FEMS Microbiol. Ecol., 91 (6). OXFORD: OXFORD UNIV PRESS. ISSN 1574-6941

Degrune, Florine, Dumack, Kenneth, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Bonkowski, Michael, Sosa-Hernandez, Moises A., Schloter, Michael, Kautz, Timo, Fischer, Doreen and Rillig, Matthias C. ORCID: 0000-0003-3541-7853 (2019). Distinct communities of Cercozoa at different soil depths in a temperate agricultural field. FEMS Microbiol. Ecol., 95 (4). OXFORD: OXFORD UNIV PRESS. ISSN 1574-6941

Dumack, Kenneth ORCID: 0000-0001-8798-0483, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Bass, David and Bonkowski, Michael ORCID: 0000-0003-2656-1183 (2020). Making sense of environmental sequencing data: Ecologically important functional traits of the protistan groups Cercozoa and Endomyxa (Rhizaria). Mol. Ecol. Resour., 20 (2). S. 398 - 404. HOBOKEN: WILEY. ISSN 1755-0998

Felipe-Lucia, Maria R., Soliveres, Santiago, Penone, Caterina ORCID: 0000-0002-8170-6659, Fischer, Markus, Ammer, Christian, Boch, Steffen ORCID: 0000-0003-2814-5343, Boeddinghaus, Runa S., Bonkowski, Michael, Buscot, Francois, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Franki, Kevin, Goldmann, Kezia, Gossner, Martin M., Hoelzel, Norbert, Jochum, Malte, Kandeler, Ellen, Klaus, Valentin H. ORCID: 0000-0002-7469-6800, Kleinebecker, Till, Leimer, Sophia ORCID: 0000-0001-6272-204X, Manning, Peter, Oelmann, Yvonne, Saiz, Hugo, Schall, Peter, Schloter, Michael, Schoening, Ingo, Schrumpf, Marion, Solly, Emily F., Stempfhuber, Barbara, Weisser, Wolfgang W., Wilcke, Wolfgang, Wubet, Tesfaye and Allan, Eric (2020). Land-use intensity alters networks between biodiversity, ecosystem functions, and services. Proc. Natl. Acad. Sci. U. S. A., 117 (45). S. 28140 - 28150. WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907 and Bonkowski, Michael . Different community compositions between obligate and facultative oomycete plant parasites in a landscape-scale metabarcoding survey. Biol. Fertil. Soils. NEW YORK: SPRINGER. ISSN 1432-0789

Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Human, Zander R., Stursova, Martina, Mundra, Sunil, Morgado, Luis, Kauserud, Havard, Baldrian, Petr ORCID: 0000-0002-8983-2721 and Bonkowski, Michael (2022). Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition. Soil Biol. Biochem., 168. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD. ISSN 1879-3428

Fiore-Donno, Anna Maria, Richter-Heitmann, Tim ORCID: 0000-0002-2791-7252 and Bonkowski, Michael (2020). Contrasting Responses of Protistan Plant Parasites and Phagotrophs to Ecosystems, Land Management and Soil Properties. Front. Microbiol., 11. LAUSANNE: FRONTIERS MEDIA SA. ISSN 1664-302X

Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Richter-Heitmann, Tim ORCID: 0000-0002-2791-7252, Degrune, Florine, Dumack, Kenneth, Regan, Kathleen M., Marhan, Sven, Boeddinghaus, Runa S., Rillig, Matthias C. ORCID: 0000-0003-3541-7853, Friedrich, Michael W. ORCID: 0000-0002-8055-3232, Kandeler, Ellen ORCID: 0000-0002-2854-0012 and Bonkowski, Michael (2019). Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland. Front. Microbiol., 10. LAUSANNE: FRONTIERS MEDIA SA. ISSN 1664-302X

Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Rixen, Christian, Rippin, Martin, Glaser, Karin, Samolov, Elena, Karsten, Ulf, Becker, Burkhard ORCID: 0000-0002-7965-1396 and Bonkowski, Michael (2018). New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts. Mol. Ecol. Resour., 18 (2). S. 229 - 240. HOBOKEN: WILEY. ISSN 1755-0998

Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Tice, Alexander K. and Brown, Matthew W. (2019). A Non-Flagellated Member of the Myxogastria and Expansion of the Echinosteliida. J. Eukaryot. Microbiol., 66 (4). S. 538 - 545. HOBOKEN: WILEY. ISSN 1550-7408

Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Weinert, Jan, Wubet, Tesfaye ORCID: 0000-0001-8572-4486 and Bonkowski, Michael ORCID: 0000-0003-2656-1183 (2016). Metacommunity analysis of amoeboid protists in grassland soils. Sci Rep, 6. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Geisen, Stefan ORCID: 0000-0003-0734-727X, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Walochnik, Julia ORCID: 0000-0003-0356-2853 and Bonkowski, Michael ORCID: 0000-0003-2656-1183 (2014). Acanthamoeba everywhere: high diversity of Acanthamoeba in soils. Parasitol. Res., 113 (9). S. 3151 - 3159. NEW YORK: SPRINGER. ISSN 1432-1955

Geisen, Stefan ORCID: 0000-0003-0734-727X, Mitchell, Edward A. D., Wilkinson, David M., Adl, Sina ORCID: 0000-0001-6324-6065, Bonkowski, Michael ORCID: 0000-0003-2656-1183, Brown, Matthew W., Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Heger, Thierry J., Jassey, Vincent E. J., Krashevska, Valentyna ORCID: 0000-0002-9765-5833, Lahr, Daniel J. G., Marcisz, Katarzyna ORCID: 0000-0003-2655-9729, Mulot, Matthieu, Payne, Richard, Singer, David ORCID: 0000-0002-4116-033X, Anderson, O. Roger, Charman, Dan J., Ekelund, Flemming, Griffiths, Bryan S., Ronn, Regin ORCID: 0000-0002-7486-1191, Smirnov, Alexey ORCID: 0000-0001-5361-8232, Bass, David, Belbahri, Lassaad ORCID: 0000-0001-7040-4500, Berney, Cedric ORCID: 0000-0001-8689-9907, Blandenier, Quentin ORCID: 0000-0002-4297-0262, Chatzinotas, Antonis ORCID: 0000-0002-0387-9802, Clarholm, Marianne, Dunthorn, Micah, Feest, Alan, Fernandez, Leonardo D., Foissner, Wilhelm, Fournier, Bertrand ORCID: 0000-0002-7106-6109, Gentekaki, Eleni, Hajek, Michal ORCID: 0000-0002-5201-2682, Helder, Johannes, Jousset, Alexandre, Koller, Robert ORCID: 0000-0001-7251-7242, Kumar, Santosh, La Terza, Antonietta ORCID: 0000-0002-1244-1503, Lamentowicz, Mariusz ORCID: 0000-0003-0429-1530, Mazei, Yuri ORCID: 0000-0002-5443-8919, Santos, Susana S., Seppey, Christophe V. W., Spiegel, Frederick W., Walochnik, Julia ORCID: 0000-0003-0356-2853, Winding, Anne and Lara, Enrique ORCID: 0000-0001-8500-522X (2017). Soil protistology rebooted: 30 fundamental questions to start with. Soil Biol. Biochem., 111. S. 94 - 104. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD. ISSN 0038-0717

Jauss, Robin-Tobias, Walden, Susanne, Fiore-Donno, Anna Maria, Dumack, Kenneth, Schaffer, Stefan, Wolf, Ronny, Schlegel, Martin and Bonkowski, Michael (2020). From Forest Soil to the Canopy: Increased Habitat Diversity Does Not Increase Species Richness of Cercozoa and Oomycota in Tree Canopies. Front. Microbiol., 11. LAUSANNE: FRONTIERS MEDIA SA. ISSN 1664-302X

Jauss, Robin-Tobias, Walden, Susanne, Fiore-Donno, Anna Maria, Schaffer, Stefan, Wolf, Ronny, Feng, Kai, Bonkowski, Michael and Schlegel, Martin (2021). A Parasite's Paradise: Biotrophic Species Prevail Oomycete Community Composition in Tree Canopies. Front. For. Glob. Change, 4. LAUSANNE: FRONTIERS MEDIA SA. ISSN 2624-893X

Kretzschmar, Martin, Kuhnt, Andreas, Bonkowski, Michael and Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907 (2016). Phylogeny of the Highly Divergent Echinosteliales (Amoebozoa). J. Eukaryot. Microbiol., 63 (4). S. 453 - 460. HOBOKEN: WILEY. ISSN 1550-7408

Le Provost, Gaetane ORCID: 0000-0002-1643-6023, Thiele, Jan ORCID: 0000-0002-5649-6397, Westphal, Catrin ORCID: 0000-0002-2615-1339, Penone, Caterina ORCID: 0000-0002-8170-6659, Allan, Eric ORCID: 0000-0001-9641-9436, Neyret, Margot ORCID: 0000-0001-9435-1634, van der Plas, Fons ORCID: 0000-0003-4680-543X, Ayasse, Manfred, Bardgett, Richard D., Birkhofer, Klaus ORCID: 0000-0002-9301-2443, Boch, Steffen, Bonkowski, Michael, Buscot, Francois, Feldhaar, Heike, Gaulton, Rachel, Goldmann, Kezia, Gossner, Martin M., Klaus, Valentin H., Kleinebecker, Till, Krauss, Jochen ORCID: 0000-0003-2304-9117, Renner, Swen, Scherreiks, Pascal, Sikorski, Johannes, Baulechner, Dennis ORCID: 0000-0003-1839-9657, Bluethgen, Nico, Bolliger, Ralph, Boerschig, Carmen, Busch, Verena, Chiste, Melanie, Fiore-Donno, Anna Maria, Fischer, Markus, Arndt, Hartmut, Hoelzel, Norbert, John, Katharina ORCID: 0000-0002-7611-822X, Jung, Kirsten, Lange, Markus, Marzini, Carlo, Overmann, Joerg, Pasalic, Esther, Perovic, David J., Prati, Daniel, Schaefer, Deborah, Schoening, Ingo, Schrumpf, Marion ORCID: 0000-0003-4219-4125, Sonnemann, Ilja, Steffan-Dewenter, Ingolf, Tschapka, Marco, Tuerke, Manfred, Vogt, Juliane, Wehner, Katja, Weiner, Christiane, Weisser, Wolfgang, Wells, Konstans, Werner, Michael, Wolters, Volkmar ORCID: 0000-0002-7556-4578, Wubet, Tesfaye ORCID: 0000-0001-8572-4486, Wurst, Susanne, Zaitsev, Andrey S. and Manning, Peter ORCID: 0000-0002-7940-2023 (2021). Contrasting responses of above- and belowground diversity to multiple components of land-use intensity. Nat. Commun., 12 (1). BERLIN: NATURE PORTFOLIO. ISSN 2041-1723

Pawlowski, Jan ORCID: 0000-0003-2421-388X, Audic, Stephane ORCID: 0000-0001-6193-4374, Adl, Sina ORCID: 0000-0001-6324-6065, Bass, David, Belbahri, Lassaad ORCID: 0000-0001-7040-4500, Berney, Cedric ORCID: 0000-0001-8689-9907, Bowser, Samuel S., Cepicka, Ivan ORCID: 0000-0002-4322-0754, Decelle, Johan ORCID: 0000-0002-4343-8358, Dunthorn, Micah, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Gile, Gillian H., Holzmann, Maria, Jahn, Regine, Jirku, Miloslav, Keeling, Patrick J., Kostka, Martin, Kudryavtsev, Alexander ORCID: 0000-0002-3818-3610, Lara, Enrique ORCID: 0000-0001-8500-522X, Lukes, Julius ORCID: 0000-0002-0578-6618, Mann, David G., Mitchell, Edward A. D., Nitsche, Frank ORCID: 0000-0003-3950-8285, Romeralo, Maria, Saunders, Gary W., Simpson, Alastair G. B., Smirnov, Alexey V. ORCID: 0000-0002-9844-5344, Spouge, John L., Stern, Rowena F., Stoeck, Thorsten, Zimmermann, Jonas, Schindel, David and de Vargas, Colomban (2012). CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms. PLoS. Biol., 10 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1545-7885

Pescador, David S., Delgado-Baquerizo, Manuel ORCID: 0000-0002-6499-576X, Fiore-Donno, Anna Maria, Singh, Brajesh K., Bonkowski, Michael and Maestre, Fernando T. ORCID: 0000-0002-7434-4856 (2022). Ecological clusters of soil taxa within bipartite networks are highly sensitive to climatic conditions in global drylands. Philos. Trans. R. Soc. B-Biol. Sci., 377 (1857). LONDON: ROYAL SOC. ISSN 1471-2970

Rindt, Oscar ORCID: 0000-0001-9870-4580, Rosinger, Christoph ORCID: 0000-0002-4973-3921, Bonkowski, Michael ORCID: 0000-0003-2656-1183, Rixen, Christian ORCID: 0000-0002-2486-9988, Brueggemann, Nicolas, Urich, Tim ORCID: 0000-0002-5718-1354 and Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907 (2023). Biogeochemical dynamics during snowmelt and in summer in the Alps. Biogeochemistry, 162 (2). S. 257 - 267. DORDRECHT: SPRINGER. ISSN 1573-515X

Rossmann, Maike, Perez-Jaramillo, Juan E., Kavamura, Vanessa N., Chiaramonte, Josiane B., Dumack, Kenneth, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Mendes, Lucas W., Ferreira, Marcia M. C., Bonkowski, Michael, Raaijmakers, Jos M., Mauchline, Tim H. and Mendes, Rodrigo (2020). Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists. FEMS Microbiol. Ecol., 96 (4). OXFORD: OXFORD UNIV PRESS. ISSN 1574-6941

Starke, Robert, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, White, Richard Allen, Fernandes, Maysa Lima Parente, Martinovic, Tijana ORCID: 0000-0001-6940-0473, Bastida, Felipe, Delgado-Baquerizo, Manuel and Jehmlich, Nico (2022). Biomarker metaproteomics for relative taxa abundances across soil organisms. Soil Biol. Biochem., 175. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD. ISSN 1879-3428

Strelow, Daniel ORCID: 0000-0003-1530-2717, De Haan, Myriam, Bonkowski, Michael and Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907 (2020). New insights into the phylogeny of the dark-spored Myxomycetes (Amoebozoa: Conosa: Myxogastria: Fuscisporidia) and polyphyly of the genus Stemonitis. Syst. Biodivers., 18 (3). S. 228 - 237. ABINGDON: TAYLOR & FRANCIS LTD. ISSN 1478-0933

Tice, Alexander K., Shadwick, Lora L., Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Geisen, Stefan ORCID: 0000-0003-0734-727X, Kang, Seungho, Schuler, Gabriel A., Spiegel, Frederick W., Wilkinson, Katherine A., Bonkowski, Michael ORCID: 0000-0003-2656-1183, Dumack, Kenneth, Lahr, Daniel J. G., Voelcker, Eckhard, Clauss, Steffen, Zhang, Junling and Brown, Matthew W. (2016). Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group. Biol. Direct, 11. LONDON: BMC. ISSN 1745-6150

Voss, Christian, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Guerreiro, Marco Alexandre, Persoh, Derek and Bonkowski, Michael (2019). Metatranscriptomics reveals unsuspected protistan diversity in leaf litter across temperate beech forests, with Amoebozoa the dominating lineage. FEMS Microbiol. Ecol., 95 (10). OXFORD: OXFORD UNIV PRESS. ISSN 1574-6941

Walden, Susanne, Jauss, Robin-Tobias, Feng, Kai ORCID: 0000-0002-9954-570X, Fiore-Donno, Anna Maria ORCID: 0000-0001-6265-1907, Dumack, Kenneth ORCID: 0000-0001-8798-0483, Schaffer, Stefan, Wolf, Ronny, Schlegel, Martin and Bonkowski, Michael ORCID: 0000-0003-2656-1183 (2021). On the phenology of protists: recurrent patterns reveal seasonal variation of protistan (Rhizaria: Cercozoa and Endomyxa) communities in tree canopies. FEMS Microbiol. Ecol., 97 (7). OXFORD: OXFORD UNIV PRESS. ISSN 1574-6941