Universität zu Köln

Journal Article

Abdallah, Ali T., Fischer, Matthias, Nuernberg, Peter, Nothnagel, Michael ORCID: 0000-0001-8305-7114 and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2015). CoNCoS: Copy number estimation in cancer with controlled support. J. Bioinform. Comput. Biol., 13 (5). LONDON: IMPERIAL COLLEGE PRESS. ISSN 1757-6334

Basel-Vanagaite, Lina, Dallapiccola, Bruno ORCID: 0000-0002-5031-1013, Ramirez-Solis, Ramiro ORCID: 0000-0003-4182-173X, Segref, Alexandra ORCID: 0000-0001-8095-4469, Thiele, Holger, Edwards, Andrew, Arends, Mark J., Miro, Xavier, White, Jacqueline K., Desir, Julie, Abramowicz, Marc ORCID: 0000-0003-0623-8768, Dentici, Maria Lisa, Lepri, Francesca, Hofmann, Kay, Har-Zahav, Adi, Ryder, Edward ORCID: 0000-0002-1799-9899, Karp, Natasha A., Estabel, Jeanne, Gerdin, Anna-Karin B., Podrini, Christine ORCID: 0000-0002-5391-3378, Ingham, Neil J., Altmueller, Janine, Nuernberg, Gudrun, Frommolt, Peter ORCID: 0000-0002-1966-8014, Abdelhak, Sonia ORCID: 0000-0001-8466-5525, Pasmanik-Chor, Metsada, Konen, Osnat, Kelley, Richard I., Shohat, Mordechai, Nuernberg, Peter, Flint, Jonathan, Steel, Karen P., Hoppe, Thorsten ORCID: 0000-0002-4734-9352, Kubisch, Christian ORCID: 0000-0003-4220-0978, Adams, David J. and Borck, Guntram (2012). Deficiency for the Ubiquitin Ligase UBE3B in a Blepharophimosis-Ptosis-Intellectual-Disability Syndrome. Am. J. Hum. Genet., 91 (6). S. 998 - 1011. CAMBRIDGE: CELL PRESS. ISSN 0002-9297

Borck, Guntram, Shin, Byung-Sik, Stiller, Barbara, Mimouni-Bloch, Aviva, Thiele, Holger, Kim, Joo-Ran, Thakur, Meghna, Skinner, Cindy, Aschenbach, Lara, Smirin-Yosef, Pola, Har-Zahav, Adi, Nuernberg, Gudrun, Altmueller, Janine, Frommolt, Peter ORCID: 0000-0002-1966-8014, Hofmann, Kay, Konen, Osnat, Nuernberg, Peter, Munnich, Arnold, Schwartz, Charles E., Gothelf, Doron, Colleaux, Laurence, Dever, Thomas E., Kubisch, Christian ORCID: 0000-0003-4220-0978 and Basel-Vanagaite, Lina (2012). elF2 gamma Mutation that Disrupts elF2 Complex Integrity Links Intellectual Disability to Impaired Translation Initiation. Mol. Cell, 48 (4). S. 641 - 647. CAMBRIDGE: CELL PRESS. ISSN 1097-2765

Braun, Fabian ORCID: 0000-0002-4742-050X, Rinschen, Markus M., Bartels, Valerie, Frommolt, Peter ORCID: 0000-0002-1966-8014, Habermann, Bianca ORCID: 0000-0002-2457-7504, Hoeijmakers, Jan H. J., Schumacher, Bojrn, Dolle, Martijn E. T., Mueller, Roman-Ulrich, Benzing, Thomas, Schermer, Bernhard ORCID: 0000-0002-5194-9000 and Kurschat, Christine E. (2016). Altered lipid metabolism in the aging kidney identified by three layered omic analysis. Aging-US, 8 (3). S. 441 - 458. ORCHARD PARK: IMPACT JOURNALS LLC. ISSN 1945-4589

Crispatzu, Giuliano, Kulkarni, Pranav, Toliat, Mohammad R., Nuernberg, Peter, Herling, Marco, Herling, Carmen D. and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2017). Semi-automated cancer genome analysis using high-performance computing. Hum. Mutat., 38 (10). S. 1325 - 1336. HOBOKEN: WILEY. ISSN 1098-1004

Cruz-Molina, Sara, Respuela, Patricia ORCID: 0000-0002-9719-7860, Tebartz, Christina, Kolovos, Petros ORCID: 0000-0002-0787-6158, Nikolic, Milos ORCID: 0000-0003-0029-7601, Fueyo, Raquel, van Ijcken, Wilfred F. J., Grosveld, Frank, Frommolt, Peter ORCID: 0000-0002-1966-8014, Bazzi, Hisham ORCID: 0000-0001-8388-4005 and Rada-Iglesias, Alvaro (2017). PRC2 Facilitates the Regulatory Topology Required for Poised Enhancer Function during Pluripotent Stem Cell Differentiation. Cell Stem Cell, 20 (5). S. 689 - 715. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Fischer, Sarah ORCID: 0000-0001-6227-3950, Rijal, Ramesh, Frommolt, Peter ORCID: 0000-0002-1966-8014, Wagle, Prerana, Konertz, Roman, Faix, Jan, Wissling, Susanne and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2019). Functional Characterization of Ubiquitin-Like Core Autophagy Protein ATG12 in Dictyostelium discoideum. Cells, 8 (1). BASEL: MDPI. ISSN 2073-4409

Frerichs, Anneke, Thoma, Rahere, Abdallah, Ali Taleb, Frommolt, Peter ORCID: 0000-0002-1966-8014, Werr, Wolfgang and Chandler, John William (2016). The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem. BMC Genomics, 17. LONDON: BMC. ISSN 1471-2164

Gao, Jie ORCID: 0000-0002-5229-9249, Schatton, Desiree, Martinelli, Paola, Hansen, Henriette, Pla-Martin, David, Barth, Esther, Becker, Christian, Altmueller, Janine, Frommolt, Peter ORCID: 0000-0002-1966-8014, Sardiello, Marco and Rugarli, Elena I. ORCID: 0000-0002-5782-1067 (2014). CLUH regulates mitochondrial biogenesis by binding mRNAs of nuclear-encoded mitochondrial proteins. J. Cell Biol., 207 (2). S. 213 - 224. NEW YORK: ROCKEFELLER UNIV PRESS. ISSN 1540-8140

Gutierrez, Saray, Fischer, Julia ORCID: 0000-0001-6138-7454, Ganesan, Raja, Hos, Nina Judith, Cildir, Goekhan, Wolke, Martina, Pessia, Alberto, Frommolt, Peter, Desiderio, Vincenzo, Velagapudi, Vidya and Robinson, Nirmal ORCID: 0000-0002-7361-9491 (2021). Salmonella Typhimurium impairs glycolysis-mediated acidification of phagosomes to evade macrophage defense. PLoS Pathog., 17 (9). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7374

Herholz, Marija, Cepeda, Estela, Baumann, Linda, Kukat, Alexandra, Hermeling, Johannes, Maciej, Sarah, Szczepanowska, Karolina, Pavlenko, Victor, Frommolt, Peter ORCID: 0000-0002-1966-8014 and Trifunovic, Aleksandra ORCID: 0000-0002-5472-3517 (2019). KLF-1 orchestrates a xenobiotic detoxification program essential for longevity of mitochondrial mutants. Nat. Commun., 10. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Hussain, Muhammad S., Baig, Shahid M., Neumann, Sascha, Peche, Vivek S., Szczepanski, Sandra, Nuernberg, Gudrun, Tariq, Muhammad ORCID: 0000-0002-5334-403X, Jameel, Muhammad, Khan, Tahir N., Fatima, Ambrin, Malik, Naveed A., Ahmad, Ilyas, Altmueller, Janine, Frommolt, Peter ORCID: 0000-0002-1966-8014, Thiele, Holger, Hoehne, Wolfgang, Yigit, Goekhan, Wollnik, Bernd, Neubauer, Bernd A., Nuernberg, Peter and Noegel, Angelika A. (2013). CDK6 associates with the centrosome during mitosis and is mutated in a large Pakistani family with primary microcephaly. Hum. Mol. Genet., 22 (25). S. 5199 - 5215. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2083

Jordanovski, Darko, Herwartz, Christine, Pawlowski, Anna, Taute, Stefanie, Frommolt, Peter ORCID: 0000-0002-1966-8014 and Steger, Gertrud (2013). The Hypoxia-Inducible Transcription Factor ZNF395 Is Controlled by I kappa B Kinase-Signaling and Activates Genes Involved in the Innate Immune Response and Cancer. PLoS One, 8 (9). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Kaiser, Rainer W. J., Ignarski, Michael ORCID: 0000-0001-6057-7694, Van Nostrand, Eric L., Frese, Christian K., Jain, Manaswita, Cukoski, Sadrija, Heinen, Heide, Schaechter, Melanie, Seufert, Lisa, Bunte, Konstantin, Frommolt, Peter ORCID: 0000-0002-1966-8014, Keller, Patrick, Helm, Mark, Bohl, Katrin, Hoehne, Martin, Schermer, Bernhard, Benzing, Thomas, Hoepker, Katja, Dieterich, Christoph, Yeo, Gene W., Mueller, Roman-Ulrich and Fabretti, Francesca (2019). A protein-RNA interaction atlas of the ribosome biogenesis factor AATF. Sci Rep, 9. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Krempel, Rasmus, Kulkarni, Pranav, Yim, Annie, Lang, Ulrich ORCID: 0000-0001-7166-0805, Habermann, Bianca ORCID: 0000-0002-2457-7504 and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2018). Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB). BMC Bioinformatics, 19. LONDON: BIOMED CENTRAL LTD. ISSN 1471-2105

Kuelshammer, Eva, Mundorf, Juliane, Kilinc, Merve, Frommolt, Peter ORCID: 0000-0002-1966-8014, Wagle, Prerana and Uhlirova, Mirka ORCID: 0000-0002-5735-8287 (2015). Interplay among Drosophila transcription factors Ets21c, Fos and Ftz-F1 drives JNK-mediated tumor malignancy. Dis. Model. Mech., 8 (10). S. 1279 - 1294. CAMBRIDGE: COMPANY BIOLOGISTS LTD. ISSN 1754-8411

Kulkarni, Pranav and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2017). Challenges in the Setup of Large-scale Next-Generation Sequencing Analysis Workflows. Comp. Struct. Biotechnol. J.., 15. S. 471 - 478. AMSTERDAM: ELSEVIER SCIENCE BV. ISSN 2001-0370

Laugsch, Magdalena, Bartusel, Michaela, Rehimi, Rizwan, Alirzayeva, Hafiza, Karaolidou, Agathi, Crispatzu, Giuliano, Zentis, Peter, Nikolic, Milos ORCID: 0000-0003-0029-7601, Bleckwehl, Tore, Kolovos, Petros ORCID: 0000-0002-0787-6158, van Ijcken, Wilfred F. J., Saric, Tomo, Koehler, Katrin, Frommolt, Peter ORCID: 0000-0002-1966-8014, Lachlan, Katherine, Baptista, Julia and Rada-Iglesias, Alvaro (2019). Modeling the Pathological Long-Range Regulatory Effects of Human Structural Variation with Patient-Specific hiPSCs. Cell Stem Cell, 24 (5). S. 736 - 765. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Moinzadeh, P. ORCID: 0000-0002-8784-8615, Frommolt, Peter ORCID: 0000-0002-1966-8014, Franitza, M., Toliat, Mohammad Reza ORCID: 0000-0002-9248-3200, Becker, K., Nürnberg, Peter ORCID: 0000-0002-7228-428X, Nihtyanova, Svetlana I. ORCID: 0000-0001-5178-9038, Ahrazoglu, M., Belz, Doreen ORCID: 0000-0002-7824-3315, Hunzelmann, N., Abraham, D., Ong, V. H., Mouthon, L., Hesselstrand, R., Denton, C. P. and Krieg, Thomas M. ORCID: 0000-0001-5616-8476 (2020). Whole blood gene expression profiling distinguishes systemic sclerosis‐overlap syndromes from other subsets. Journal of the European Academy of Dermatology and Venereology, 34 (5). Wiley. ISSN 0926-9959

Mueller, Michael M., Castells-Roca, Laia ORCID: 0000-0002-4604-9999, Babu, Vipin ORCID: 0000-0002-0001-8783, Ermolaeva, Maria A., Mueller, Roman-Ulrich, Frommolt, Peter ORCID: 0000-0002-1966-8014, Williams, Ashley B., Greiss, Sebastian ORCID: 0000-0001-9130-0831, Schneider, Jennifer I., Benzing, Thomas, Schermer, Bernhard ORCID: 0000-0002-5194-9000 and Schumacher, Bjoern (2014). DAF-16/FOXO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damage. Nat. Cell Biol., 16 (12). S. 1168 - 1192. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4679

Oliverio, Matteo ORCID: 0000-0002-7969-2796, Schmidt, Elena ORCID: 0000-0003-0829-1423, Mauer, Jan ORCID: 0000-0002-0189-5876, Baitzel, Catherina, Hansmeier, Nils, Khani, Sajjad, Konieczka, Sandra, Pradas-Juni, Marta, Brodesser, Susanne, Bartsch, Deniz ORCID: 0000-0003-3299-8330, Broenneke, Hella S., Heine, Markus, Hilpert, Hans, Tarcitano, Emilio, Garinis, George A. ORCID: 0000-0002-3200-5004, Frommolt, Peter ORCID: 0000-0002-1966-8014, Heeren, Joerg, Mori, Marcelo A., Bruening, Jens C. and Kornfeld, Jan-Wilhelm ORCID: 0000-0002-6802-4442 (2016). Dicer1-miR-328-Bace1 signalling controls brown adipose tissue differentiation and function. Nat. Cell Biol., 18 (3). S. 328 - 348. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4679

Pradas-Juni, Marta, Hansmeier, Nils R., Link, Jenny C., Schmidt, Elena ORCID: 0000-0003-0829-1423, Larsen, Bjork Ditlev, Klemm, Paul ORCID: 0000-0002-5985-1737, Meola, Nicola, Topel, Hande ORCID: 0000-0001-5743-4019, Loureiro, Rute, Dhaouadi, Ines ORCID: 0000-0002-2762-6500, Kiefer, Christoph A., Schwarzer, Robin, Khani, Sajjad, Oliverio, Matteo, Awazawa, Motoharu, Frommolt, Peter ORCID: 0000-0002-1966-8014, Heeren, Joerg, Scheja, Ludger, Heine, Markus, Dieterich, Christoph, Buening, Hildegard, Yang, Ling, Cao, Haiming, De Jesus, Dario F., Kulkarni, Rohit N., Zevnik, Branko ORCID: 0000-0001-7845-9522, Troeder, Simon E., Knippschild, Uwe, Edwards, Peter A., Lee, Richard G., Yamamoto, Masayuki, Ulitsky, Igor, Fernandez-Rebollo, Eduardo, Vallim, Thomas Q. de Aguiar and Kornfeld, Jan-Wilhelm ORCID: 0000-0002-6802-4442 (2020). A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism. Nat. Commun., 11 (1). LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Quaas, Alexander, Heydt, Carina, Gebauer, Florian, Alakus, Hakan, Loeser, Heike ORCID: 0000-0003-4555-1327, Buettner, Reinhard, Hillmer, Axel ORCID: 0000-0002-3381-7266, Bruns, Christiane, Merkelbach-Bruse, Sabine, Zander, Thomas and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2019). Genomic Characterization of TP53-Wild-Type Esophageal Carcinoma. Transl. Oncol., 12 (1). S. 154 - 162. NEW YORK: ELSEVIER SCIENCE INC. ISSN 1936-5233

Rehimi, Rizwan, Nikolic, Milos ORCID: 0000-0003-0029-7601, Cruz-Molina, Sara, Tebartz, Christina, Frommolt, Peter ORCID: 0000-0002-1966-8014, Mahabir, Esther, Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X and Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341 (2016). Epigenomics-Based Identification of Major Cell Identity Regulators within Heterogeneous Cell Populations. Cell Reports, 17 (11). S. 3062 - 3077. CAMBRIDGE: CELL PRESS. ISSN 2211-1247

Respuela, Patricia ORCID: 0000-0002-9719-7860, Nikolic, Milos ORCID: 0000-0003-0029-7601, Tan, Minjia ORCID: 0000-0002-6784-9653, Frommolt, Peter ORCID: 0000-0002-1966-8014, Zhao, Yingming, Wysocka, Joanna and Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341 (2016). Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification. Cell Stem Cell, 18 (1). S. 118 - 134. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Rynes, Jan, Donohoe, Colin D., Frommolt, Peter ORCID: 0000-0002-1966-8014, Brodesser, Susanne, Jindra, Marek ORCID: 0000-0002-2196-9924 and Uhlirova, Mirka ORCID: 0000-0002-5735-8287 (2012). Activating Transcription Factor 3 Regulates Immune and Metabolic Homeostasis. Mol. Cell. Biol., 32 (19). S. 3949 - 3963. WASHINGTON: AMER SOC MICROBIOLOGY. ISSN 0270-7306

Schiffer, Philipp H., Kroiher, Michael, Kraus, Christopher, Koutsovoulos, Georgios D., Kumar, Sujai ORCID: 0000-0001-5902-6641, Camps, Julia I. R., Nsah, Ndifon A., Stappert, Dominik, Morris, Krystalynne, Heger, Peter ORCID: 0000-0003-2583-2981, Altmueller, Janine, Frommolt, Peter ORCID: 0000-0002-1966-8014, Nuernberg, Peter, Thomas, W. Kelley, Blaxter, Mark L. and Schierenberg, Einhard (2013). The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda. BMC Genomics, 14. LONDON: BMC. ISSN 1471-2164

Schwarzenberger, Anke, Sadler, Thomas ORCID: 0000-0002-8621-379X, Motameny, Susanne, Ben-Khalifa, Kamel, Frommolt, Peter ORCID: 0000-0002-1966-8014, Altmueller, Janine, Konrad, Kathryn and von Elert, Eric ORCID: 0000-0001-7758-716X (2014). Deciphering the genetic basis of microcystin tolerance. BMC Genomics, 15. LONDON: BMC. ISSN 1471-2164

Steculorum, Sophie M., Ruud, Johan, Karakasilioti, Ismene, Backes, Heiko, Ruud, Linda Engstroem, Timper, Katharina, Hess, Martin E., Tsaousidou, Eva ORCID: 0000-0003-2751-1911, Mauer, Jan ORCID: 0000-0002-0189-5876, Vogt, Merly C., Paeger, Lars ORCID: 0000-0001-8716-3483, Bremser, Stephan, Klein, Andreas C., Morgan, Donald A., Frommolt, Peter ORCID: 0000-0002-1966-8014, Brinkkoetter, Paul T., Hammerschmidt, Philipp, Benzing, Thomas, Rahmouni, Kamal ORCID: 0000-0001-5136-6748, Wunderlich, F. Thomas, Kloppenburg, Peter and Bruening, Jens C. (2016). AgRP Neurons Control Systemic Insulin Sensitivity via Myostatin Expression in Brown Adipose Tissue. Cell, 165 (1). S. 125 - 139. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

Wagle, Prerana, Nikolic, Milos ORCID: 0000-0003-0029-7601 and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2015). QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation. BMC Genomics, 16. LONDON: BIOMED CENTRAL LTD. ISSN 1471-2164

Weber, Stefanie, Thiele, Holger, Mir, Sevgi, Toliat, Mohammad Reza, Sozeri, Betuel, Reutter, Heiko, Draaken, Markus ORCID: 0000-0002-4546-0786, Ludwig, Michael, Altmueller, Janine, Frommolt, Peter ORCID: 0000-0002-1966-8014, Stuart, Helen M., Ranjzad, Parisa ORCID: 0000-0001-7413-4157, Hanley, Neil A., Jennings, Rachel, Newman, William G., Wilcox, Duncan T., Thiel, Uwe, Schlingmann, Karl Peter, Beetz, Rolf, Hoyer, Peter F., Konrad, Martin, Schaefer, Franz, Nuernberg, Peter and Woolf, Adrian S. ORCID: 0000-0001-5541-1358 (2011). Muscarinic Acetylcholine Receptor M3 Mutation Causes Urinary Bladder Disease and a Prune-Belly-like Syndrome. Am. J. Hum. Genet., 89 (5). S. 668 - 675. CAMBRIDGE: CELL PRESS. ISSN 0002-9297

Welcker, Daniela, Jain, Manaswita ORCID: 0000-0002-5107-7505, Khurshid, Safiya ORCID: 0000-0003-1620-3091, Jokic, Mladen, Hoehne, Martin, Schmitt, Anna, Frommolt, Peter ORCID: 0000-0002-1966-8014, Niessen, Carien M., Spiro, Judith, Persigehl, Thorsten, Wittersheim, Maike, Buettner, Reinhard, Fanciulli, Maurizio, Schermer, Bernhard ORCID: 0000-0002-5194-9000, Reinhardt, Hans Christian, Benzing, Thomas and Hoepker, Katja (2018). AATF suppresses apoptosis, promotes proliferation and is critical for Kras-driven lung cancer. Oncogene, 37 (11). S. 1503 - 1519. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-5594