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Journal Article
Glas, Julia, Duemcke, Sebastian, Zacher, Benedikt, Poron, Don, Gagneur, Julien 
ORCID: 0000-0002-8924-8365 and Tresch, Achim
(2016).
Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model.
Nucleic Acids Res., 44 (5).
OXFORD:
OXFORD UNIV PRESS.
ISSN 1362-4962
Schwalb, Bjorn ORCID: 0000-0003-2987-2622, Michel, Margaux, Zacher, Benedikt, Fruehauf, Katja, Demel, Carina, Tresch, Achim, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Cramer, Patrick
(2016).
TT-seq maps the human transient transcriptome.
Science, 352 (6290).
S. 1225 - 1229.
WASHINGTON:
AMER ASSOC ADVANCEMENT SCIENCE.
ISSN 1095-9203
Stricker, Georg ORCID: 0000-0003-2949-1758, Engelhardt, Alexander, Schulz, Daniel, Schmid, Matthias ORCID: 0000-0002-0788-0317, Tresch, Achim and Gagneur, Julien ORCID: 0000-0002-8924-8365
(2017).
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis.
Bioinformatics, 33 (15).
S. 2258 - 2266.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1460-2059
Zacher, Benedikt, Lidschreiber, Michael, Cramer, Patrick, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Tresch, Achim
(2014).
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle.
Mol. Syst. Biol., 10 (12).
HOBOKEN:
WILEY-BLACKWELL.
ISSN 1744-4292
Zacher, Benedikt, Michel, Margaux, Schwalb, Bjoern, Cramer, Patrick, Tresch, Achim and Gagneur, Julien ORCID: 0000-0002-8924-8365
(2017).
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
PLoS One, 12 (1).
SAN FRANCISCO:
PUBLIC LIBRARY SCIENCE.
ISSN 1932-6203