Universität zu Köln

Journal Article

Cheng, Shifeng, Melkonian, Michael, Smith, Stephen A., Brockington, Samuel ORCID: 0000-0003-1216-219X, Archibald, John M., Delaux, Pierre-Marc ORCID: 0000-0002-6211-157X, Li, Fay-Wei ORCID: 0000-0002-0076-0152, Melkonian, Barbara, Mavrodiev, Evgeny V., Sun, Wenjing, Fu, Yuan, Yang, Huanming, Soltis, Douglas E., Graham, Sean W., Soltis, Pamela S., Liu, Xin ORCID: 0000-0003-3256-2940, Xu, Xun ORCID: 0000-0002-5338-5173 and Wong, Gane Ka-Shu (2018). 10KP: A phylodiverse genome sequencing plan. GigaScience, 7 (3). OXFORD: OXFORD UNIV PRESS. ISSN 2047-217X

Cheng, Shifeng, Xian, Wenfei, Fu, Yuan, Marin, Birger, Keller, Jean ORCID: 0000-0002-5198-0331, Wu, Tian, Sun, Wenjing, Li, Xiuli, Xu, Yan, Zhang, Yu, Wittek, Sebastian, Reder, Tanja, Guenther, Gerd, Gontcharov, Andrey, Wang, Sibo, Li, Linzhou, Liu, Xin ORCID: 0000-0003-3256-2940, Wang, Jian, Yang, Huanming, Xu, Xun ORCID: 0000-0002-5338-5173, Delaux, Pierre-Marc, Melkonian, Barbara, Wong, Gane Ka-Shu ORCID: 0000-0001-6108-5560 and Melkonian, Michael (2019). Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution. Cell, 179 (5). S. 1057 - 1082. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

Dijkhuizen, Laura W., Brouwer, Paul, Bolhuis, Henk ORCID: 0000-0002-4772-1898, Reichart, Gert-Jan ORCID: 0000-0002-7256-2243, Koppers, Nils, Huettel, Bruno, Bolger, Anthony M., Li, Fay-Wei ORCID: 0000-0002-0076-0152, Cheng, Shifeng, Liu, Xin ORCID: 0000-0003-3256-2940, Wong, Gane Ka-Shu, Pryer, Kathleen, Weber, Andreas, Braeutigam, Andrea and Schluepmann, Henriette ORCID: 0000-0001-6171-3029 (2018). Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N-2 but may denitrify. New Phytol., 217 (1). S. 453 - 467. HOBOKEN: WILEY. ISSN 1469-8137

Glantz, Spencer T., Carpenter, Eric J., Melkonian, Michael, Gardner, Kevin H. ORCID: 0000-0002-8671-2556, Boyden, Edward S., Wong, Gane Ka-Shu and Chow, Brian Y. (2016). Functional and topological diversity of LOV domain photoreceptors. Proc. Natl. Acad. Sci. U. S. A., 113 (11). S. E1442 - 10. WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Goh, Falicia Qi Yun, Jeyakani, Justin, Tipthara, Phornpimon, Cazenave-Gassiot, Amaury ORCID: 0000-0002-3050-634X, Ghosh, Rajoshi, Bogard, Nicholas, Yeo, Zhenxuan, Wong, Gane Ka-Shu, Melkonian, Michael, Wenk, Markus R. and Clarke, Neil D. (2019). Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae. Sci Rep, 9. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Jeandroz, Sylvain, Wipf, Daniel ORCID: 0000-0001-7197-5612, Stuehr, Dennis J., Lamattina, Lorenzo, Melkonian, Michael, Tian, Zhijian, Zhu, Ying, Carpenter, Eric J., Wong, Gane Ka-Shu and Wendehenne, David ORCID: 0000-0002-1088-102X (2016). Occurrence, structure, and evolution of nitric oxide synthase-like proteins in the plant kingdom. Sci. Signal., 9 (417). WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE. ISSN 1937-9145

Jensen, Jacob Kruger, Busse-Wicher, Marta, Poulsen, Christian Peter, Fangel, Jonatan Ulrik, Smith, Peter James, Yang, Jeong-Yeh, Pena, Maria-Jesus, Dinesen, Malene Hessellund, Martens, Helle Juel, Melkonian, Michael, Wong, Gane Ka-Shu, Moremen, Kelley W., Wilkerson, Curtis Gene, Scheller, Henrik Vibe, Dupree, Paul ORCID: 0000-0001-9270-6286, Ulvskov, Peter ORCID: 0000-0003-3776-818X, Urbanowicz, Breeanna Rae and Harholt, Jesper ORCID: 0000-0002-7984-0066 (2018). Identification of an algal xylan synthase indicates that there is functional orthology between algal and plant cell wall biosynthesis. New Phytol., 218 (3). S. 1049 - 1061. HOBOKEN: WILEY. ISSN 1469-8137

Johnson, Kim L., Cassin, Andrew M., Lonsdale, Andrew, Wong, Gane Ka-Shu, Soltis, Douglas E., Miles, Nicholas W., Melkonian, Michael, Melkonian, Barbara, Deyholos, Michael K., Leebens-Mack, James ORCID: 0000-0003-4811-2231, Rothfels, Carl J., Stevenson, Dennis W., Graham, Sean W., Wang, Xumin, Wu, Shuangxiu, Pires, J. Chris ORCID: 0000-0001-9682-2639, Edger, Patrick P., Carpenter, Eric J., Bacic, Antony, Doblin, Monika S. and Schultz, Carolyn J. (2017). Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes. Plant Physiol., 174 (2). S. 904 - 922. ROCKVILLE: AMER SOC PLANT BIOLOGISTS. ISSN 1532-2548

Lane, Thomas S., Rempe, Caroline S., Davitt, Jack, Staton, Margaret E., Peng, Yanhui, Soltis, Douglas Edward, Melkonian, Michael, Deyholos, Michael, Leebens-Mack, James H., Chase, Mark, Rothfels, Carl J., Stevenson, Dennis, Graham, Sean W., Yu, Jun, Liu, Tao, Pires, J. Chris ORCID: 0000-0001-9682-2639, Edger, Patrick P., Zhang, Yong, Xie, Yinlong, Zhu, Ying, Carpenter, Eric, Wong, Gane Ka-Shu and Stewart, C. Neal, Jr. (2016). Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. BMC Biotechnol., 16. LONDON: BMC. ISSN 1472-6750

Leebens-Mack, James H., Barker, Michael S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse, Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Quint, Marcel, Rensing, Stefan A., Soltis, Douglas E., Soltis, Pamela S., Stevenson, Dennis W., Ullrich, Kristian K., Wickett, Norman J., DeGironimo, Lisa, Edger, Patrick P., Jordon-Thaden, Ingrid E., Joya, Steve, Liu, Tao, Melkonian, Barbara, Miles, Nicholas W., Pokorny, Lisa ORCID: 0000-0002-2478-8555, Quigley, Charlotte, Thomas, Philip, Villarreal, Juan Carlos, Augustin, Megan M., Barrett, Matthew D., Baucom, Regina S., Beerling, David J., Benstein, Ruben Maximilian, Biffin, Ed, Brockington, Samuel F., Burge, Dylan O., Burris, Jason N., Burris, Kellie P., Burtet-Sarramegna, Valerie, Caicedo, Ana L., Cannon, Steven B., Cebi, Zehra, Chang, Ying, Chater, Caspar, Cheeseman, John M., Chen, Tao, Clarke, Neil D., Clayton, Harmony, Covshoff, Sarah, Crandall-Stotler, Barbara J., Cross, Hugh, dePamphilis, Claude W., Der, Joshua P., Determann, Ron, Dickson, Rowan C., Di Stilio, Veronica S. ORCID: 0000-0002-6921-3018, Ellis, Shona, Fast, Eva, Feja, Nicole, Field, Katie J., Filatov, Dmitry A., Finnegan, Patrick M., Floyd, Sandra K., Fogliani, Bruno, Garcia, Nicolas ORCID: 0000-0001-9003-1510, Gateble, Gildas ORCID: 0000-0003-2831-6384, Godden, Grant T., Goh, Falicia (Qi Yun), Greiner, Stephan ORCID: 0000-0003-3369-0354, Harkess, Alex, Heaney, James Mike, Helliwell, Katherine E., Heyduk, Karolina, Hibberd, Julian M., Hodel, Richard G. J., Hollingsworth, Peter M., Johnson, Marc T. J., Jost, Ricarda, Joyce, Blake ORCID: 0000-0002-4784-2251, Kapralov, Maxim V., Kazamia, Elena, Kellogg, Elizabeth A., Koch, Marcus A., Von Konrat, Matt, Konyves, Kalman, Kutchan, Toni M., Lam, Vivienne, Larsson, Anders, Leitch, Andrew R., Lentz, Roswitha, Li, Fay-Wei, Lowe, Andrew J., Ludwig, Martha ORCID: 0000-0002-0324-7602, Manos, Paul S., Mavrodiev, Evgeny, McCormick, Melissa K., McKain, Michael, McLellan, Tracy, McNeal, Joel R., Miller, Richard E., Nelson, Matthew N., Peng, Yanhui, Ralph, Paula, Real, Daniel, Riggins, Chance W., Ruhsam, Markus, Sage, Rowan F., Sakai, Ann K., Scascitella, Moira, Schilling, Edward E., Schlosser, Eva-Marie, Sederoff, Heike ORCID: 0000-0002-0960-9678, Servick, Stein, Sessa, Emily B., Shaw, A. Jonathan, Shaw, Shane W., Sigel, Erin M., Skema, Cynthia, Smith, Alison G., Smithson, Ann, Stewart, C. Neal, Jr., Stinchcombe, John R., Szovenyi, Peter, Tate, Jennifer A., Tiebel, Helga, Trapnell, Dorset, Villegente, Matthieu, Wang, Chun-Neng, Weller, Stephen G., Wenzel, Michael, Weststrand, Stina, Westwood, James H., Whigham, Dennis F., Wu, Shuangxiu, Wulff, Adrien S., Yang, Yu, Zhu, Dan, Zhuang, Cuili, Zuidof, Jennifer, Chase, Mark W., Pires, J. Chris, Rothfels, Carl J., Yu, Jun, Chen, Cui, Chen, Li, Cheng, Shifeng, Li, Juanjuan, Li, Ran, Li, Xia, Lu, Haorong, Ou, Yanxiang, Sun, Xiao, Tan, Xuemei, Tang, Jingbo, Tian, Zhijian, Wang, Feng, Wang, Jun, Wei, Xiaofeng, Xu, Xun, Yan, Zhixiang, Yang, Fan, Zhong, Xiaoni, Zhou, Feiyu, Zhu, Ying, Zhang, Yong, Ayyampalayam, Saravanaraj, Barkman, Todd J., Matasci, Naim, Nelson, David R., Sayyari, Erfan, Wafula, Eric K., Walls, Ramona L., Warnow, Tandy, An, Hong, Arrigo, Nils, Baniaga, Anthony E., Galuska, Sally, Jorgensen, Stacy A., Kidder, Thomas I., Kong, Hanghui ORCID: 0000-0003-2721-0449, Lu-Irving, Patricia, Marx, Hannah E., Qi, Xinshuai, Reardon, Chris R., Sutherland, Brittany L., Tiley, George P., Welles, Shana R., Yu, Rongpei, Zhan, Shing, Gramzow, Lydia, Theissen, Gunter and Wong, Gane Ka-Shu ORCID: 0000-0001-6108-5560 (2019). One thousand plant transcriptomes and the phylogenomics of green plants. Nature, 574 (7780). S. 679 - 696. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4687

Li, Linzhou, Wang, Sibo, Wang, Hongli, Sahu, Sunil Kumar ORCID: 0000-0002-4742-9870, Marin, Birger, Li, Haoyuan, Xu, Yan, Liang, Hongping, Li, Zhen ORCID: 0000-0001-8920-9270, Cheng, Shifeng, Reder, Tanja, Cebi, Zehra, Wittek, Sebastian, Petersen, Morten, Melkonian, Barbara, Du, Hongli, Yang, Huanming, Wang, Jian, Wong, Gane Ka-Shu ORCID: 0000-0001-6108-5560, Xu, Xun, Liu, Xin ORCID: 0000-0003-3256-2940, Van de Peer, Yves ORCID: 0000-0003-4327-3730, Melkonian, Michael and Liu, Huan (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nat. Ecol. Evol., 4 (9). S. 1220 - 1237. LONDON: NATURE PUBLISHING GROUP. ISSN 2397-334X

Maugarny-Cales, Aude, Goncalves, Beatriz ORCID: 0000-0002-7939-5433, Jouannic, Stefan, Melkonian, Michael, Wong, Gane Ka-Shu and Laufs, Patrick ORCID: 0000-0003-4459-3445 (2016). Apparition of the NAC Transcription Factors Predates the Emergence of Land Plants. Mol. Plant., 9 (9). S. 1345 - 1349. CAMBRIDGE: CELL PRESS. ISSN 1752-9867

Mutte, Sumanth K., Kato, Hirotaka ORCID: 0000-0002-8521-1450, Rothfels, Carl ORCID: 0000-0002-6605-1770, Melkonian, Michael, Wong, Gane Ka-Shu and Weijers, Dolf ORCID: 0000-0003-4378-141X (2018). Origin and evolution of the nuclear auxin response system. eLife, 7. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD. ISSN 2050-084X

Wang, Sibo, Li, Linzhou, Li, Haoyuan, Sahu, Sunil Kumar ORCID: 0000-0002-4742-9870, Wang, Hongli, Xu, Yan, Xian, Wenfei, Song, Bo, Liang, Hongping, Cheng, Shifeng, Chang, Yue, Song, Yue, Cebi, Zehra, Wittek, Sebastian, Reder, Tanja, Peterson, Morten, Yang, Huanming, Wang, Jian, Melkonian, Barbara, van de Peer, Yves, Xu, Xun, Wong, Gane Ka-Shu ORCID: 0000-0001-6108-5560, Melkonian, Michael, Liu, Huan and Liu, Xin ORCID: 0000-0003-3256-2940 (2020). Genomes of early-diverging streptophyte algae shed light on plant terrestrialization. Nat. Plants, 6 (2). S. 95 - 112. LONDON: NATURE PUBLISHING GROUP. ISSN 2055-0278