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Number of items: 29.

Journal Article

Johnsen, Marc, Kubacki, Torsten, Yeroslaviz, Assa, Spaeth, Martin Richard, Moersdorf, Jannis, Gobel, Heike, Bohl, Katrin, Ignarski, Michael ORCID: 0000-0001-6057-7694, Meharg, Caroline, Habermann, Bianca ORCID: 0000-0002-2457-7504, Altmueller, Janine, Beyer, Andreas ORCID: 0000-0002-3891-2123, Benzing, Thomas, Schermer, Bernhard, Burst, Volker and Mueller, Roman-Ulrich (2020). The Integrated RNA Landscape of Renal Preconditioning against Ischemia-Reperfusion Injury. J. Am. Soc. Nephrol., 31 (4). S. 716 - 731. WASHINGTON: AMER SOC NEPHROLOGY. ISSN 1533-3450

Kamrad, Stephan ORCID: 0000-0002-5957-4661, Grossbach, Jan, Rodriguez-Lopez, Maria, Muelleder, Michael, Townsend, StJohn, Cappelletti, Valentina, Stojanovski, Gorjan, Correia-Melo, Clara, Picotti, Paola, Beyer, Andreas ORCID: 0000-0002-3891-2123, Ralser, Markus ORCID: 0000-0001-9535-7413 and Bahler, Jurg ORCID: 0000-0003-4036-1532 (2020). Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance. Mol. Syst. Biol., 16 (4). HOBOKEN: WILEY. ISSN 1744-4292

Lapin, Dmitry ORCID: 0000-0001-9591-3950, Kovacova, Viera, Sun, Xinhua, Dongus, Joram A., Bhandari, Deepak ORCID: 0000-0002-7666-6410, von Born, Patrick, Bautor, Jaqueline, Guarneri, Nina ORCID: 0000-0002-0399-9230, Rzemieniewski, Jakub ORCID: 0000-0001-7274-383X, Stuttmann, Johannes ORCID: 0000-0002-6207-094X, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Parker, Jane E. (2019). A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors. Plant Cell, 31 (10). S. 2430 - 2456. ROCKVILLE: AMER SOC PLANT BIOLOGISTS. ISSN 1532-298X

Shao, Wenguang, Guo, Tiannan ORCID: 0000-0003-3869-7651, Toussaint, Nora C., Xue, Peng, Wagner, Ulrich, Li, Li, Charmpi, Konstantina, Zhu, Yi, Wu, Jianmin ORCID: 0000-0002-8876-128X, Buljan, Marija, Sun, Rui, Rutishauser, Dorothea ORCID: 0000-0003-2303-103X, Hermanns, Thomas, Fankhauser, Christian Daniel, Poyet, Cedric, Ljubicic, Jelena, Rupp, Niels, Ruschoff, Jan H., Zhong, Qing ORCID: 0000-0002-5340-301X, Beyer, Andreas ORCID: 0000-0002-3891-2123, Ji, Jiafu, Collins, Ben C., Liu, Yansheng, Ratsch, Gunnar, Wild, Peter J. and Aebersold, Ruedi (2019). Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins. Nat. Commun., 10. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Soste, Martin, Charmpi, Konstantina, Lampert, Fabienne, Gerez, Juan Atilio, van Oostrum, Marc ORCID: 0000-0001-8747-9787, Malinovska, Liliana, Boersema, Paul Jonathan, Prymaczok, Natalia Cecilia, Riek, Roland, Peter, Matthias, Vanni, Stefano ORCID: 0000-0003-2146-1140, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Picotti, Paola (2019). Proteomics-Based Monitoring of Pathway Activity Reveals that Blocking Diacylglycerol Biosynthesis Rescues from Alpha-Synuclein Toxicity. Cell Syst., 9 (3). S. 309 - 329. CAMBRIDGE: CELL PRESS. ISSN 2405-4720

Hahn, Oliver ORCID: 0000-0001-9015-4545, Drews, Lisa F., Tatsuta, Takashi, Gkioni, Lisonia, Hendrich, Oliver, Zhang, Qifeng, Langer, Thomas, Pletcher, Scott, Wakelam, Michael J. O., Beyer, Andreas ORCID: 0000-0002-3891-2123, Groenke, Sebastian and Partridge, Linda (2019). A nutritional memory effect counteracts the benefits of dietary restriction in old mice. Nat. Metab., 1 (11). S. 1059 - 1085. LONDON: NATURE PUBLISHING GROUP. ISSN 2522-5812

Spaeth, Martin R., Bartram, Malte P., Palacio-Escat, Nicolas ORCID: 0000-0002-7022-1437, Hoyer, K. Johanna R., Debes, Cedric, Demir, Fatih ORCID: 0000-0002-5744-0205, Schroeter, Christina B., Mandel, Amrei M., Grundmann, Franziska, Ciarimboli, Giuliano, Beyer, Andreas ORCID: 0000-0002-3891-2123, Kizhakkedathu, Jayachandran N., Brodesser, Susanne, Goebel, Heike, Becker, Jan U., Benzing, Thomas, Schermer, Bernhard ORCID: 0000-0002-5194-9000, Hoehne, Martin, Burst, Volker, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976, Huesgen, Pitter F., Mueller, Roman-Ulrich and Rinschen, Markus M. (2019). The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury. Kidney Int., 95 (2). S. 333 - 350. NEW YORK: ELSEVIER SCIENCE INC. ISSN 1523-1755

Hahn, Oliver ORCID: 0000-0001-9015-4545, Stubbs, Thomas M., Reik, Wolf ORCID: 0000-0003-0216-9881, Groenke, Sebastian, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Partridge, Linda ORCID: 0000-0001-9615-0094 (2018). Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity. PLoS Genet., 14 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7404

Guo, Tiannan ORCID: 0000-0003-3869-7651, Li, Li, Zhong, Qing ORCID: 0000-0002-5340-301X, Rupp, Niels J., Charmpi, Konstantina, Wong, Christine E., Wagner, Ulrich, Rueschoff, Jan H., Jochum, Wolfram, Fankhauser, Christian Daniel, Saba, Karim, Poyet, Cedric, Wild, Peter J., Aebersold, Ruedi and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2018). Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers. Life Sci. Alliance, 1 (2). COLD SPRING HARBOR: LIFE SCIENCE ALLIANCE LLC. ISSN 2575-1077

Hoehne, Martin, Frese, Christian K., Grahammer, Florian, Dafinger, Claudia, Ciarimboli, Giuliano, Butt, Linus, Binz, Julia, Hackl, Matthias J., Rahmatollahi, Mahdieh, Kann, Martin, Schneider, Simon, Altintas, Mehmet M., Schermer, Bernhard ORCID: 0000-0002-5194-9000, Reinheckel, Thomas ORCID: 0000-0001-9866-9105, Goebel, Heike, Reiser, Jochen, Huber, Tobias B. ORCID: 0000-0001-7175-5062, Kramann, Rafael, Seeger-Nukpezah, Tamina, Liebau, Max C., Beck, Bodo B., Benzing, Thomas, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Rinschen, Markus M. (2018). Single-nephron proteomes connect morphology and function in proteinuric kidney disease. Kidney Int., 93 (6). S. 1308 - 1320. NEW YORK: ELSEVIER SCIENCE INC. ISSN 1523-1755

Seifert, Michael and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2018). regNet: an R package for network-based propagation of gene expression alterations. Bioinformatics, 34 (2). S. 308 - 312. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

Christodoulou, Eleni G., Yang, Hai, Lademann, Franziska, Pilarsky, Christian ORCID: 0000-0002-7968-3283, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Schroeder, Michael (2017). Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens. Oncotarget, 8 (21). S. 34283 - 34298. ORCHARD PARK: IMPACT JOURNALS LLC. ISSN 1949-2553

Hahn, Oliver ORCID: 0000-0001-9015-4545, Groenke, Sebastian, Stubbs, Thomas M., Ficz, Gabriella, Hendrich, Oliver, Krueger, Felix ORCID: 0000-0002-5513-3324, Andrews, Simon, Zhang, Qifeng, Wakelam, Michael J., Beyer, Andreas ORCID: 0000-0002-3891-2123, Reik, Wolf and Partridge, Linda ORCID: 0000-0001-9615-0094 (2017). Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism. Genome Biol., 18. LONDON: BMC. ISSN 1474-760X

Mackmull, Marie-Therese ORCID: 0000-0003-2928-1144, Klaus, Bernd, Heinze, Ivonne, Chokkalingam, Manopriya, Beyer, Andreas ORCID: 0000-0002-3891-2123, Russell, Robert B., Ori, Alessandro ORCID: 0000-0002-3046-0871 and Beck, Martin ORCID: 0000-0002-7397-1321 (2017). Landscape of nuclear transport receptor cargo specificity. Mol. Syst. Biol., 13 (12). HOBOKEN: WILEY. ISSN 1744-4292

Liu, Yansheng ORCID: 0000-0002-2626-3912, Borel, Christelle, Li, Li, Mueller, Torsten, Williams, Evan G., Germain, Pierre-Luc, Buljan, Marija, Sajic, Tatjana, Boersema, Paul J., Shao, Wenguang, Faini, Marco, Testa, Giuseppe ORCID: 0000-0002-9104-0918, Beyer, Andreas ORCID: 0000-0002-3891-2123, Antonarakis, Stylianos E. and Aebersold, Ruedi ORCID: 0000-0002-9576-3267 (2017). Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells. Nat. Commun., 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Tain, Luke S., Sehlke, Robert, Jain, Chirag, Chokkalingam, Manopriya, Nagaraj, Nagarjuna, Essers, Paul, Rassner, Mark, Groenke, Sebastian, Froelich, Jenny, Dieterich, Christoph, Mann, Matthias, Alic, Nazif ORCID: 0000-0003-0356-6600, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Partridge, Linda ORCID: 0000-0001-9615-0094 (2017). A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. Mol. Syst. Biol., 13 (9). HOBOKEN: WILEY. ISSN 1744-4292

He, Fei, Arce, Agustin L., Schmitz, Gregor, Koornneef, Maarten ORCID: 0000-0002-7759-4869, Novikova, Polina, Beyer, Andreas ORCID: 0000-0002-3891-2123 and de Meaux, Juliette ORCID: 0000-0002-2942-4750 (2016). The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus. Mol. Biol. Evol., 33 (8). S. 2088 - 2102. OXFORD: OXFORD UNIV PRESS. ISSN 1537-1719

Seifert, Michael, Friedrich, Betty and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2016). Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis. Genome Biol., 17. LONDON: BMC. ISSN 1474-760X

Liu, Yansheng ORCID: 0000-0002-2626-3912, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Aebersold, Ruedi (2016). On the Dependency of Cellular Protein Levels on mRNA Abundance. Cell, 165 (3). S. 535 - 551. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

Gatto, Laurent ORCID: 0000-0002-1520-2268, Hansen, Kasper D., Hoopmann, Michael R., Hermjakob, Henning ORCID: 0000-0001-8479-0262, Kohlbacher, Oliver and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2016). Testing and Validation of Computational Methods for Mass Spectrometry. J. Proteome Res., 15 (3). S. 809 - 815. WASHINGTON: AMER CHEMICAL SOC. ISSN 1535-3907

Valenzano, Dario Riccardo ORCID: 0000-0002-8761-8289, Benayoun, Berenice A., Singh, Param Priya, Zhang, Elisa, Etter, Paul D., Hu, Chi-Kuo, Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X, Willemsen, David, Cui, Rongfeng ORCID: 0000-0002-8146-6958, Harel, Itamar ORCID: 0000-0001-9749-8279, Machado, Ben E., Yee, Muh-Ching, Sharp, Sabrina C., Bustamante, Carlos D. ORCID: 0000-0002-4187-7920, Beyer, Andreas ORCID: 0000-0002-3891-2123, Johnson, Eric A. and Brunet, Anne (2015). The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan. Cell, 163 (6). S. 1539 - 1555. CAMBRIDGE: CELL PRESS. ISSN 1097-4172

Hass, Johanna, Walton, Esther ORCID: 0000-0002-0935-2200, Wright, Carrie ORCID: 0000-0003-1325-6067, Beyer, Andreas ORCID: 0000-0002-3891-2123, Scholz, Markus, Turner, Jessica, Liu, Jingyu ORCID: 0000-0002-1724-7523, Smolka, Michael N., Roessner, Veit, Sponheim, Scott R., Gollub, Randy L. ORCID: 0000-0002-9434-4044, Calhoun, Vince D. and Ehrlich, Stefan ORCID: 0000-0003-2132-4445 (2015). Associations between DNA methylation and schizophrenia-related intermediate phenotypes - A gene set enrichment analysis. Prog. Neuro-Psychopharmacol. Biol. Psychiatry, 59. S. 31 - 40. OXFORD: PERGAMON-ELSEVIER SCIENCE LTD. ISSN 1878-4216

Eduati, Federica ORCID: 0000-0002-7822-3867, Mangravite, Lara M., Wang, Tao, Tang, Hao, Bare, J. Christopher ORCID: 0000-0003-1006-1491, Huang, Ruili, Norman, Thea, Kellen, Mike, Menden, Michael P., Yang, Jichen, Zhan, Xiaowei, Zhong, Rui, Xiao, Guanghua, Xia, Menghang, Abdo, Nour, Kosyk, Oksana, Friend, Stephen, Dearry, Allen, Simeonov, Anton, Tice, Raymond R., Rusyn, Ivan ORCID: 0000-0001-9340-7384, Wright, Fred A., Stolovitzky, Gustavo, Xie, Yang, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976, Aittokallio, Tero ORCID: 0000-0002-0886-9769, Alaimo, Salvatore, Amadoz, Alicia ORCID: 0000-0003-3915-0404, Ammad-ud-din, Muhammad, Azencott, Chloe-Agathe ORCID: 0000-0003-1003-301X, Bacardit, Jaume ORCID: 0000-0002-2692-7205, Barron, Pelham, Bernard, Elsa ORCID: 0000-0002-2057-7187, Beyer, Andreas ORCID: 0000-0002-3891-2123, Bin, Shao, van Boemmel, Alena, Borgwardt, Karsten, Brys, April M., Caffrey, Brian, Chang, Jeffrey, Chang, Jungsoo, Chheda, Himanshu, Christodoulou, Eleni G., Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X, Cohen, Trevor, Cowherd, Marianne ORCID: 0000-0002-3165-4504, Demeyer, Sofie ORCID: 0000-0002-8193-5734, Dopazo, Joaquin, Elhard, Joel D., Falcao, Andre O. ORCID: 0000-0002-3588-8746, Ferro, Alfredo, Friedenberg, David A., Giugno, Rosalba ORCID: 0000-0001-9843-7638, Gong, Yunguo, Gorospe, Jenni W., Granville, Courtney A., Grimm, Dominik, Heinig, Matthias ORCID: 0000-0002-5612-1720, Hernansaiz, Rosa D., Hintsanen, Petteri, Hochreiter, Sepp ORCID: 0000-0001-7449-2528, Huang, Liang-Chin, Huska, Matthew, Jaiswal, Alok, Jiao, Yunlong, Kaski, Samuel ORCID: 0000-0003-1925-9154, Kaur, Ismeet, Khan, Suleiman Ali, Klambauer, Guenter, Krasnogor, Natalio, Kuhn, Michael, Kursa, Miron Bartosz, Kutum, Rintu, Lazzarini, Nicola, Lee, Inhan, Leung, Michael K. K., Lim, Weng Khong ORCID: 0000-0003-4391-1130, Liu, Charlie, Lopez, Felipe Llinares, Mammana, Alessandro, Mayr, Andreas, Michoel, Tom ORCID: 0000-0003-4749-4725, Mongiovi, Misael, Moore, Jonathan D., Mpindi, John-Patrick, Narasimhan, Ravi, Opiyo, Stephen O., Pandey, Gaurav, Peabody, Andrea L., Perner, Juliane, Poso, Antti ORCID: 0000-0003-4196-4204, Pulvirenti, Alfredo ORCID: 0000-0002-9764-0295, Rawlik, Konrad, Reinhardt, Susanne, Riffle, Carol G., Ruderfer, Douglas, Sander, Aaron J., Savage, Richard S., Scornet, Erwan, Sebastian-Leon, Patricia, Sharan, Roded, Simon-Gabriel, Carl Johann, Stoven, Veronique, Sun, Jingchun, Tang, Jing ORCID: 0000-0001-7480-7710, Teixeira, Ana L., Tenesa, Albert, Vert, Jean-Philippe ORCID: 0000-0001-9510-8441, Vingron, Martin, Walter, Thomas ORCID: 0000-0001-7419-7879, Wennerberg, Krister, Whalen, Sean, Wisniewska, Zofia, Wu, Yonghui, Xu, Hua, Zhang, Shihua, Zhao, Junfei and Zheng, W. Jim (2015). Prediction of human population responses to toxic compounds by a collaborative competition. Nat. Biotechnol., 33 (9). S. 933 - 944. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1696

Stephan, Johannes ORCID: 0000-0002-1279-2477, Stegle, Oliver ORCID: 0000-0002-8818-7193 and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2015). A random forest approach to capture genetic effects in the presence of population structure. Nat. Commun., 6. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Kuhn, Michael ORCID: 0000-0002-2841-872X, Hyman, Anthony A. and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2014). Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome. PLoS Comput. Biol., 10 (6). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X, Marsellach, Francesc X., Codlin, Sandra, Papadakis, Manos A., Reinhardt, Susanne, Rodriguez-Lopez, Maria ORCID: 0000-0002-2066-0589, Martin, Stuart, Marguerat, Samuel ORCID: 0000-0002-2402-3165, Schmidt, Alexander, Lee, Eunhye, Workman, Christopher T., Baehler, Juerg and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2014). Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Mol. Syst. Biol., 10 (11). HOBOKEN: WILEY. ISSN 1744-4292

Simeone, Angela, Marsico, Giovanni, Collinet, Claudio ORCID: 0000-0002-8532-2601, Galvez, Thierry, Kalaidzidis, Yannis ORCID: 0000-0002-6137-1193, Zerial, Marino and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2014). Revealing Molecular Mechanisms by Integrating High-Dimensional Functional Screens with Protein Interaction Data. PLoS Comput. Biol., 10 (9). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

Guenal-Sadik, Gamze, Paszkowski-Rogacz, Maciej, Singaravelu, Kalaimathy, Beyer, Andreas ORCID: 0000-0002-3891-2123, Buchholz, Frank ORCID: 0000-0002-4577-3344 and Jessberger, Rolf (2014). Stage-Specific Binding Profiles of Cohesin in Resting and Activated B Lymphocytes Suggest a Role for Cohesin in Immunoglobulin Class Switching and Maturation. PLoS One, 9 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Sikora-Wohlfeld, Weronika, Ackermann, Marit, Christodoulou, Eleni G., Singaravelu, Kalaimathy and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2013). Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data. PLoS Comput. Biol., 9 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

This list was generated on Tue Oct 19 08:14:24 2021 CEST.