Universität zu Köln

Journal Article

Saadat, Nima P., van Aalst, Marvin ORCID: 0000-0002-7434-0249 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2022). Network Reconstruction and Modelling Made Reproducible with moped. Metabolites, 12 (4). BASEL: MDPI. ISSN 2218-1989

Wilken, St Elmo, Frazao, Victor Vera, Saadat, Nima P. and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2021). The view of microbes as energy converters illustrates the trade-off between growth rate and yield. Biochem. Soc. Trans., 49 (4). S. 1663 - 1675. LONDON: PORTLAND PRESS LTD. ISSN 1470-8752

Saadat, Nima P., Nies, Tim ORCID: 0000-0003-1587-2971, Rousset, Yvan ORCID: 0000-0002-9118-7178 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2020). Thermodynamic Limits and Optimality of Microbial Growth. Entropy, 22 (3). BASEL: MDPI. ISSN 1099-4300

Succurro, Antonella ORCID: 0000-0003-0227-2803, Segre, Daniel and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2019). Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth. mSystems, 4 (1). WASHINGTON: AMER SOC MICROBIOLOGY. ISSN 2379-5077

Tacchino, Francesco ORCID: 0000-0003-2008-5956, Succurro, Antonella ORCID: 0000-0003-0227-2803, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 and Gerace, Dario (2019). Optimal efficiency of the Q-cycle mechanism around physiological temperatures from an open quantum systems approach. Sci Rep, 9. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Zhao, Jia, Pokhilko, Alexandra, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398, Rosser, Susan J. and Colloms, Sean D. (2019). A single-input binary counting module based on serine integrase site-specific recombination. Nucleic Acids Res., 47 (9). S. 4896 - 4910. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Magni, Stefano ORCID: 0000-0001-8649-3616, Succurro, Antonella ORCID: 0000-0003-0227-2803, Skupin, Alexander and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2018). Data-driven dynamical model indicates that the heat shock response in Chlamydomonas reinhardtii is tailored to handle natural temperature variation. J. R. Soc. Interface, 15 (142). LONDON: ROYAL SOC. ISSN 1742-5662

Pokhilko, Alexandra, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398, Stark, W. Marshall and Colloms, Sean D. (2018). Mathematical model of a serine integrase-controlled toggle switch with a single input. J. R. Soc. Interface, 15 (143). LONDON: ROYAL SOC. ISSN 1742-5662

Succurro, Antonella ORCID: 0000-0003-0227-2803 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2018). Review and perspective on mathematical modeling of microbial ecosystems. Biochem. Soc. Trans., 46. S. 403 - 413. LONDON: PORTLAND PRESS LTD. ISSN 1470-8752

Pfau, Thomas, Christian, Nils, Masakapalli, Shyam K., Sweetlove, Lee J., Poolman, Mark G. and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2018). The intertwined metabolism during symbiotic nitrogen fixation elucidated by metabolic modelling. Sci Rep, 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Succurro, Antonella ORCID: 0000-0003-0227-2803, Moejes, Fiona Wanjiku ORCID: 0000-0002-7464-7590 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2017). A Diverse Community To Study Communities: Integration of Experiments and Mathematical Models To Study Microbial Consortia. J. Bacteriol., 199 (15). WASHINGTON: AMER SOC MICROBIOLOGY. ISSN 1098-5530

Moejes, Fiona Wanjiku ORCID: 0000-0002-7464-7590, Succurro, Antonella ORCID: 0000-0003-0227-2803, Popa, Ovidiu, Maguire, Julie and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2017). Dynamics of the Bacterial Community Associated with Phaeodactylum tricornutum Cultures. Processes, 5 (4). BASEL: MDPI AG. ISSN 2227-9717

Adlakha, Nidhi, Pfau, Thomas ORCID: 0000-0001-5048-2923, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 and Yazdani, Syed Shams (2015). Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008. Biotechnol. Biofuels, 8. LONDON: BMC. ISSN 1754-6834

Pokhilko, Alexandra and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2015). Mathematical modelling of diurnal regulation of carbohydrate allocation by osmo-related processes in plants. J. R. Soc. Interface, 12 (104). LONDON: ROYAL SOC. ISSN 1742-5662

Pokhilko, Alexandra and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2015). Mathematical modelling of diurnal regulation of carbohydrate allocation by osmo-related processes in plants. J. R. Soc. Interface, 12 (104). LONDON: ROYAL SOC. ISSN 1742-5662

Pokhilko, Alexandra, Flis, Anna ORCID: 0000-0002-9142-1606, Sulpice, Ronan ORCID: 0000-0002-6113-9570, Stitt, Mark ORCID: 0000-0002-4900-1763 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2014). Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Mol. Biosyst., 10 (3). S. 613 - 628. CAMBRIDGE: ROYAL SOC CHEMISTRY. ISSN 1742-2051

Christian, Nils, Skupin, Alexander, Morante, Silvia ORCID: 0000-0002-3913-5733, Jansen, Karl, Rossi, Giancarlo ORCID: 0000-0001-9688-9454 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2014). Mesoscopic behavior from microscopic Markov dynamics and its application to calcium release channels. J. Theor. Biol., 343. S. 102 - 113. LONDON: ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD. ISSN 1095-8541

Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398, Fucile, Geoffrey, Finazzi, Giovanni, Rochaix, Jean-David and Goldschmidt-Clermont, Michel (2014). Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model. Philos. Trans. R. Soc. B-Biol. Sci., 369 (1640). LONDON: ROYAL SOC. ISSN 1471-2970