Universität zu Köln

Harr, Bettina, Karakoc, Emre, Neme, Rafik ORCID: 0000-0001-8462-5291, Teschke, Meike, Pfeifle, Christine, Pezer, Zeljka, Babiker, Hiba, Linnenbrink, Miriam, Montero, Inka, Scavetta, Rick, Abai, Mohammad Reza, Puente Molins, Marta, Schlegel, Mathias, Ulrich, Rainer G., Altmueller, Janine, Franitza, Marek, Buentge, Anna, Kuenzel, Sven and Tautz, Diethard ORCID: 0000-0002-0460-5344 (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Sci. Data, 3. LONDON: NATURE PUBLISHING GROUP. ISSN 2052-4463

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Abstract

Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory.

Item Type:	Journal Article
Creators:	Creators Email ORCID ORCID Put Code Harr, Bettina UNSPECIFIED UNSPECIFIED UNSPECIFIED Karakoc, Emre UNSPECIFIED UNSPECIFIED UNSPECIFIED Neme, Rafik UNSPECIFIED orcid.org/0000-0001-8462-5291 UNSPECIFIED Teschke, Meike UNSPECIFIED UNSPECIFIED UNSPECIFIED Pfeifle, Christine UNSPECIFIED UNSPECIFIED UNSPECIFIED Pezer, Zeljka UNSPECIFIED UNSPECIFIED UNSPECIFIED Babiker, Hiba UNSPECIFIED UNSPECIFIED UNSPECIFIED Linnenbrink, Miriam UNSPECIFIED UNSPECIFIED UNSPECIFIED Montero, Inka UNSPECIFIED UNSPECIFIED UNSPECIFIED Scavetta, Rick UNSPECIFIED UNSPECIFIED UNSPECIFIED Abai, Mohammad Reza UNSPECIFIED UNSPECIFIED UNSPECIFIED Puente Molins, Marta UNSPECIFIED UNSPECIFIED UNSPECIFIED Schlegel, Mathias UNSPECIFIED UNSPECIFIED UNSPECIFIED Ulrich, Rainer G. UNSPECIFIED UNSPECIFIED UNSPECIFIED Altmueller, Janine UNSPECIFIED UNSPECIFIED UNSPECIFIED Franitza, Marek UNSPECIFIED UNSPECIFIED UNSPECIFIED Buentge, Anna UNSPECIFIED UNSPECIFIED UNSPECIFIED Kuenzel, Sven UNSPECIFIED UNSPECIFIED UNSPECIFIED Tautz, Diethard UNSPECIFIED orcid.org/0000-0002-0460-5344 UNSPECIFIED
URN:	urn:nbn:de:hbz:38-262385
DOI:	10.1038/sdata.2016.75
Journal or Publication Title:	Sci. Data
Volume:	3
Date:	2016
Publisher:	NATURE PUBLISHING GROUP
Place of Publication:	LONDON
ISSN:	2052-4463
Language:	English
Faculty:	Unspecified
Divisions:	Unspecified
Subjects:	no entry
Uncontrolled Keywords:	Keywords Language NATURAL-POPULATIONS; HYBRID ZONE; MICE; DNA; COLONIZATION; DOMESTICUS; FRAMEWORK; ALIGNMENT; HISTORY; NUMBER Multiple languages Multidisciplinary Sciences Multiple languages
Refereed:	Yes
URI:	http://kups.ub.uni-koeln.de/id/eprint/26238