Thomas, Gregg W. C., Dohmen, Elias ORCID: 0000-0002-7203-2314, Hughes, Daniel S. T., Murali, Shwetha C., Poelchau, Monica, Glastad, Karl, Anstead, Clare A., Ayoub, Nadia A., Batterham, Phillip, Bellair, Michelle, Binford, Greta J., Chao, Hsu, Chen, Yolanda H. ORCID: 0000-0001-9439-5899, Childers, Christopher, Dinh, Huyen, Doddapaneni, Harsha Vardhan, Duan, Jian J., Dugan, Shannon, Esposito, Lauren A., Friedrich, Markus, Garb, Jessica, Gasser, Robin B., Goodisman, Michael A. D., Gundersen-Rindal, Dawn E., Han, Yi, Handler, Alfred M., Hatakeyama, Masatsugu ORCID: 0000-0002-6220-5613, Hering, Lars, Hunter, Wayne B., Ioannidis, Panagiotis, Jayaseelan, Joy C., Kalra, Divya, Khila, Abderrahman, Korhonen, Pasi K., Lee, Carol Eunmi, Lee, Sandra L., Li, Yiyuan ORCID: 0000-0003-1426-0033, Lindsey, Amelia R. I., Mayer, Georg, McGregor, Alistair P., McKenna, Duane D., Misof, Bernhard, Munidasa, Mala, Munoz-Torres, Monica, Muzny, Donna M., Niehuis, Oliver, Osuji-Lacy, Nkechinyere, Palli, Subba R., Panfilio, Kristen A., Pechmann, Matthias, Perry, Trent ORCID: 0000-0002-8045-0487, Peters, Ralph S., Poynton, Helen C., Prpic, Nikola-Michael, Qu, Jiaxin, Rotenberg, Dorith ORCID: 0000-0002-9018-8822, Schal, Coby ORCID: 0000-0001-7195-6358, Schoville, Sean D. ORCID: 0000-0001-7364-434X, Scully, Erin D., Skinner, Evette, Sloan, Daniel B., Stouthamer, Richard, Strand, Michael R., Szucsich, Nikolaus U., Wijeratne, Asela, Young, Neil D., Zattara, Eduardo E., Benoit, Joshua B., Zdobnov, Evgeny M., Pfrender, Michael E., Hackett, Kevin J., Werren, John H., Worley, Kim C., Gibbs, Richard A., Chipman, Ariel D., Waterhouse, Robert M., Bornberg-Bauer, Erich ORCID: 0000-0002-1826-3576, Hahn, Matthew W. and Richards, Stephen ORCID: 0000-0001-8959-5466 (2020). Gene content evolution in the arthropods. Genome Biol., 21 (1). LONDON: BMC. ISSN 1474-760X

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Abstract

Background Arthropods comprise the largest and most diverse phylum on Earth and play vital roles in nearly every ecosystem. Their diversity stems in part from variations on a conserved body plan, resulting from and recorded in adaptive changes in the genome. Dissection of the genomic record of sequence change enables broad questions regarding genome evolution to be addressed, even across hyper-diverse taxa within arthropods. Results Using 76 whole genome sequences representing 21 orders spanning more than 500 million years of arthropod evolution, we document changes in gene and protein domain content and provide temporal and phylogenetic context for interpreting these innovations. We identify many novel gene families that arose early in the evolution of arthropods and during the diversification of insects into modern orders. We reveal unexpected variation in patterns of DNA methylation across arthropods and examples of gene family and protein domain evolution coincident with the appearance of notable phenotypic and physiological adaptations such as flight, metamorphosis, sociality, and chemoperception. Conclusions These analyses demonstrate how large-scale comparative genomics can provide broad new insights into the genotype to phenotype map and generate testable hypotheses about the evolution of animal diversity.

Item Type: Journal Article
Creators:
CreatorsEmailORCIDORCID Put Code
Thomas, Gregg W. C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dohmen, EliasUNSPECIFIEDorcid.org/0000-0002-7203-2314UNSPECIFIED
Hughes, Daniel S. T.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Murali, Shwetha C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Poelchau, MonicaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Glastad, KarlUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Anstead, Clare A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ayoub, Nadia A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Batterham, PhillipUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Bellair, MichelleUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Binford, Greta J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Chao, HsuUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Chen, Yolanda H.UNSPECIFIEDorcid.org/0000-0001-9439-5899UNSPECIFIED
Childers, ChristopherUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dinh, HuyenUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Doddapaneni, Harsha VardhanUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Duan, Jian J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Dugan, ShannonUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Esposito, Lauren A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Friedrich, MarkusUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Garb, JessicaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Gasser, Robin B.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Goodisman, Michael A. D.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Gundersen-Rindal, Dawn E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Han, YiUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Handler, Alfred M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Hatakeyama, MasatsuguUNSPECIFIEDorcid.org/0000-0002-6220-5613UNSPECIFIED
Hering, LarsUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Hunter, Wayne B.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ioannidis, PanagiotisUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Jayaseelan, Joy C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Kalra, DivyaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Khila, AbderrahmanUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Korhonen, Pasi K.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Lee, Carol EunmiUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Lee, Sandra L.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Li, YiyuanUNSPECIFIEDorcid.org/0000-0003-1426-0033UNSPECIFIED
Lindsey, Amelia R. I.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Mayer, GeorgUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
McGregor, Alistair P.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
McKenna, Duane D.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Misof, BernhardUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Munidasa, MalaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Munoz-Torres, MonicaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Muzny, Donna M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Niehuis, OliverUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Osuji-Lacy, NkechinyereUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Palli, Subba R.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Panfilio, Kristen A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Pechmann, MatthiasUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Perry, TrentUNSPECIFIEDorcid.org/0000-0002-8045-0487UNSPECIFIED
Peters, Ralph S.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Poynton, Helen C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Prpic, Nikola-MichaelUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Qu, JiaxinUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Rotenberg, DorithUNSPECIFIEDorcid.org/0000-0002-9018-8822UNSPECIFIED
Schal, CobyUNSPECIFIEDorcid.org/0000-0001-7195-6358UNSPECIFIED
Schoville, Sean D.UNSPECIFIEDorcid.org/0000-0001-7364-434XUNSPECIFIED
Scully, Erin D.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Skinner, EvetteUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Sloan, Daniel B.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Stouthamer, RichardUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Strand, Michael R.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Szucsich, Nikolaus U.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Wijeratne, AselaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Young, Neil D.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Zattara, Eduardo E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Benoit, Joshua B.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Zdobnov, Evgeny M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Pfrender, Michael E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Hackett, Kevin J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Werren, John H.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Worley, Kim C.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Gibbs, Richard A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Chipman, Ariel D.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Waterhouse, Robert M.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Bornberg-Bauer, ErichUNSPECIFIEDorcid.org/0000-0002-1826-3576UNSPECIFIED
Hahn, Matthew W.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Richards, StephenUNSPECIFIEDorcid.org/0000-0001-8959-5466UNSPECIFIED
URN: urn:nbn:de:hbz:38-348368
DOI: 10.1186/s13059-019-1925-7
Journal or Publication Title: Genome Biol.
Volume: 21
Number: 1
Date: 2020
Publisher: BMC
Place of Publication: LONDON
ISSN: 1474-760X
Language: English
Faculty: Unspecified
Divisions: Unspecified
Subjects: no entry
Uncontrolled Keywords:
KeywordsLanguage
HIERARCHICAL CATALOG; GENOME; ORTHODB; HISTORY; RATES; QUANTIFICATION; TRANSCRIPTOME; HYMENOPTERA; ORTHOLOGS; DYNAMICSMultiple languages
Biotechnology & Applied Microbiology; Genetics & HeredityMultiple languages
URI: http://kups.ub.uni-koeln.de/id/eprint/34836

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