Manrubia, Susanna, Cuesta, Jose A., Aguirre, Jacobo, Ahnert, Sebastian E., Altenberg, Lee, V. Cano, Alejandro, Catalan, Pablo ORCID: 0000-0003-2826-4684, Diaz-Uriarte, Ramon, Elena, Santiago F., Garcia-Martin, Juan Antonio ORCID: 0000-0003-0993-4064, Hogeweg, Paulien, Khatri, Bhavin S., Krug, Joachim, Louis, Ard A., Martin, Nora S., Payne, Joshua L., Tarnowski, Matthew J. and Weiss, Marcel (2021). From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics. Phys. Life Rev., 38. S. 55 - 107. AMSTERDAM: ELSEVIER. ISSN 1873-1457

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Abstract

Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is arguably the next major missing piece in a fully predictive theory of evolution. We refer to this generally as the problem of the genotype-phenotype map. Though we are still far from achieving a complete picture of these relationships, our current understanding of simpler questions, such as the structure induced in the space of genotypes by sequences mapped to molecular structures, has revealed important facts that deeply affect the dynamical description of evolutionary processes. Empirical evidence supporting the fundamental relevance of features such as phenotypic bias is mounting as well, while the synthesis of conceptual and experimental progress leads to questioning current assumptions on the nature of evolutionary dynamics-cancer progression models or synthetic biology approaches being notable examples. This work delves with a critical and constructive attitude into our current knowledge of how genotypes map onto molecular phenotypes and organismal functions, and discusses theoretical and empirical avenues to broaden and improve this comprehension. As a final goal, this community should aim at deriving an updated picture of evolutionary processes soundly relying on the structural properties of genotype spaces, as revealed by modern techniques of molecular and functional analysis. (c) 2021 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

Item Type: Journal Article
Creators:
CreatorsEmailORCIDORCID Put Code
Manrubia, SusannaUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Cuesta, Jose A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Aguirre, JacoboUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Ahnert, Sebastian E.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Altenberg, LeeUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
V. Cano, AlejandroUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Catalan, PabloUNSPECIFIEDorcid.org/0000-0003-2826-4684UNSPECIFIED
Diaz-Uriarte, RamonUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Elena, Santiago F.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Garcia-Martin, Juan AntonioUNSPECIFIEDorcid.org/0000-0003-0993-4064UNSPECIFIED
Hogeweg, PaulienUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Khatri, Bhavin S.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Krug, JoachimUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Louis, Ard A.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Martin, Nora S.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Payne, Joshua L.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Tarnowski, Matthew J.UNSPECIFIEDUNSPECIFIEDUNSPECIFIED
Weiss, MarcelUNSPECIFIEDUNSPECIFIEDUNSPECIFIED
URN: urn:nbn:de:hbz:38-605320
DOI: 10.1016/j.plrev.2021.03.004
Journal or Publication Title: Phys. Life Rev.
Volume: 38
Page Range: S. 55 - 107
Date: 2021
Publisher: ELSEVIER
Place of Publication: AMSTERDAM
ISSN: 1873-1457
Language: English
Faculty: Unspecified
Divisions: Unspecified
Subjects: no entry
Uncontrolled Keywords:
KeywordsLanguage
CANCER PROGRESSION MODELS; BENEFICIAL MUTATIONS; MATHEMATICAL-MODELS; FITNESS LANDSCAPES; DELETERIOUS MUTATIONS; CELLULAR INTERACTIONS; SIGN EPISTASIS; RNA; PHENOTYPE; DNAMultiple languages
Biology; BiophysicsMultiple languages
URI: http://kups.ub.uni-koeln.de/id/eprint/60532

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