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2022
Bhogale, Prasanna M., Sorg, Robin A., Veening, Jan-Willem ORCID: 0000-0002-3162-6634 and Berg, Johannes ORCID: 0000-0001-6569-3061 (2022). Switching off: The phenotypic transition to the uninduced state of the lactose uptake pathway. Biophys. J., 121 (2). S. 183 - 193. CAMBRIDGE: CELL PRESS. ISSN 1542-0086
2021
Angaji, Arman, Veiling, Christoph and Berg, Johannes (2021). Stochastic clonal dynamics and genetic turnover in exponentially growing populations. J. Stat. Mech.-Theory Exp., 2021 (10). BRISTOL: IOP Publishing Ltd. ISSN 1742-5468
2018
Dettmer, Simon L and Berg, Johannes (2018). Inferring the parameters of a Markov process from snapshots of the steady state. Journal of Statistical Mechanics: Theory and Experiment, 2018 (2). 023403. IOP. ISSN 1742-5468
2017
Berg, Johannes (2017). Statistical mechanics of the inverse Ising problem and the optimal objective function. Journal of Statistical Mechanics: Theory and Experiment, 2017 (8). 083402. IOP. ISSN 1742-5468
Nguyen, H. Chau, Zecchina, Riccardo and Berg, Johannes (2017). Inverse statistical problems: from the inverse Ising problem to data science. Advances in Physics, 66 (3). pp. 197-261. Taylor & Francis. ISSN 0001-8732
Nourmohammad, Armita, Rambeau, Joachim, Held, Torsten, Kovacova, Viera, Berg, Johannes and Lässig, Michael (2017). Adaptive Evolution of Gene Expression in Drosophila. Cell Reports, 20 (6). pp. 1385-1395. Elsevier. ISSN 22111247
2016
Dettmer, Simon L., Nguyen, H. Chau and Berg, Johannes (2016). Network inference in the nonequilibrium steady state. Phys. Rev. E, 94 (5). COLLEGE PK: AMER PHYSICAL SOC. ISSN 2470-0053
Ortiz-Cuaran, Sandra, Scheffler, Matthias ORCID: 0000-0002-9031-1368, Plenker, Dennis, Dahmen, Ilona, Scheel, Andreas H., Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Meder, Lydia ORCID: 0000-0002-9547-5812, Lovly, Christine M., Persigehl, Thorsten, Merkelbach-Bruse, Sabine, Bos, Marc, Michels, Sebastian, Fischer, Rieke, Albus, Kerstin, Koenig, Katharina, Schildhaus, Hans-Ulrich, Fassunke, Jana, Ihle, Michaela A., PasternackO, Helen, Heydt, Carina, Becker, Christian, Altmueller, Janine, Ji, Hongbin, Mueller, Christian, Florin, Alexandra, Heuckmann, Johannes M., Nuernberg, Peter, Ansen, Sascha, Heukamp, Lukas C., Berg, Johannes, Pao, William, Peifer, Martin ORCID: 0000-0002-5243-5503, Buettner, Reinhard, Wolfe, Juergen, Thomas, Roman K. and Sos, Martin L. (2016). Heterogeneous Mechanisms of Primary and Acquired Resistance to Third-Generation EGFR Inhibitors. Clin. Cancer Res., 22 (19). S. 4837 - 4848. PHILADELPHIA: AMER ASSOC CANCER RESEARCH. ISSN 1557-3265
2015
Riedel, Nico ORCID: 0000-0002-3808-1163, Khatri, Bhavin S., Laessig, Michael and Berg, Johannes (2015). Multiple-Line Inference of Selection on Quantitative Traits. Genetics, 201 (1). S. 305 - 323. BETHESDA: GENETICS SOCIETY AMERICA. ISSN 1943-2631
Sachs, Lena, Chen, Yen-Ta, Drechsler, Axel, Lynch, Jeremy A, Panfilio, Kristen A, Lässig, Michael, Berg, Johannes and Roth, Siegfried ORCID: 0000-0001-5772-3558 (2015). Dynamic BMP signaling polarized by Toll patterns the dorsoventral axis in a hemimetabolous insect. eLife, 4. Cambridge: eLife Sciences Publications. ISSN 2050-084X
2014
Bhogale, Prasanna M., Sorg, Robin A., Veening, Jan-Willem ORCID: 0000-0002-3162-6634 and Berg, Johannes (2014). What makes the lac-pathway switch: identifying the fluctuations that trigger phenotype switching in gene regulatory systems. Nucleic Acids Res., 42 (18). S. 11321 - 11329. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962
2013
Klironomos, Filippos D., de Meaux, Juliette ORCID: 0000-0002-2942-4750 and Berg, Johannes (2013). Can we always sweep the details of RNA-processing under the carpet? Phys. Biol., 10 (5). BRISTOL: IOP PUBLISHING LTD. ISSN 1478-3975
Seidel, Danila ORCID: 0000-0003-4388-3117, Zander, Thomas, Heukamp, Lukas C., Peifer, Martin ORCID: 0000-0002-5243-5503, Bos, Marc, Fernandez-Cuesta, Lynnette ORCID: 0000-0002-0724-6703, Leenders, Frauke, Lu, Xin, Ansen, Sascha, Gardizi, Masyar, Nguyen, Chau, Berg, Johannes, Russell, Prudence, Wainer, Zoe, Schildhaus, Hans-Ulrich, Rogers, Toni-Maree, Solomon, Benjamin, Pao, William, Carter, Scott L., Getz, Gad, Hayes, D. Neil, Wilkerson, Matthew D., Thunnissen, Erik, Travis, William D., Perner, Sven, Wright, Gavin ORCID: 0000-0002-7000-9305, Brambilla, Elisabeth, Buettner, Reinhard, Wolf, Juergen, Thomas, Roman, Gabler, Franziska, Wilkening, Ines, Mueller, Christian, Dahmen, Ilona, Menon, Roopika, Koenig, Katharina, Albus, Kerstin, Merkelbach-Bruse, Sabine, Fassunke, Jana, Schmitz, Katja, Kuenstlinger, Helen, Kleine, Michaela, Binot, Elke, Querings, Silvia, Altmueller, Janine, Boessmann, Ingelore, Nuemberg, Peter, Schneider, Peter, Bogus, Magdalena, Buettner, Reinhard, Perner, Sven, Russell, Prudence, Thunnissen, Erik, Travis, William D., Brambilla, Elisabeth, Soltermann, Alex, Moch, Holger, Brustugun, Odd Terje, Solberg, Steinar, Lund-Iversen, Marius, Helland, Aslaug ORCID: 0000-0002-5520-0275, Muley, Thomas, Hoffmann, Hans, Schnabel, Philipp A., Chen, Yuan, Groen, Harry, Timens, Wim ORCID: 0000-0002-4146-6363, Sietsma, Hannie, Clement, Joachim H. ORCID: 0000-0002-6601-2456, Weder, Walter, Saenger, Joerg, Stoelben, Erich, Ludwig, Corinna, Engel-Riedel, Walburga, Smit, Egbert, Heideman, Danille A. M., Snijders, Peter J. F., Nogova, Lucia, Sos, Martin L., Mattonet, Christian, Toepelt, Karin, Scheffler, Matthias ORCID: 0000-0002-9031-1368, Goekkurt, Eray, Kappes, Rainer, Krueger, Stefan, Kambartel, Kato, Behringer, Dirk, Schulte, Wolfgang, Galetke, Wolfgang, Randerath, Winfried, Heldwein, Matthias, Schlesinger, Andreas, Serke, Monika, Hekmat, Khosro, Frank, Konrad F., Schnell, Roland, Reiser, Marcel, Huenerlituerkoglu, Ali-Nuri, Schmitz, Stephan, Meffert, Lisa, Ko, Yon-Dschun, Litt-Lampe, Markus, Gerigk, Ulrich, Fricke, Rainer, Besse, Benjamin ORCID: 0000-0001-5090-8189, Brambilla, Christian, Lantuejoul, Sylvie, Lorimier, Philippe, Moro-Sibilot, Denis, Cappuzzo, Federico, Ligorio, Claudia, Damiani, Stefania, Field, John K. ORCID: 0000-0003-3951-6365, Hyde, Russell, Validire, Pierre, Girard, Philippe, Muscarella, Lucia A., Fazio, Vito M., Hallek, Michael, Soria, Jean-Charles, Carter, Scott L., Getz, Gad, Hayes, D. Neil, Wilkerson, Matthew D., Achter, Viktor, Lang, Ulrich ORCID: 0000-0001-7166-0805, Seidel, Danila ORCID: 0000-0003-4388-3117, Zander, Thomas, Heukamp, Lukas C., Peifer, Martin ORCID: 0000-0002-5243-5503, Bos, Marc, Pao, William, Travis, William D., Brambilla, Elisabeth, Buettner, Reinhard, Wolf, Juergen and Thomas, Roman K. (2013). A Genomics-Based Classification of Human Lung Tumors. Sci. Transl. Med., 5 (209). WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE. ISSN 1946-6242
2012
Kolar, Michal ORCID: 0000-0002-4593-1525, Meier, Joern, Mustonen, Ville ORCID: 0000-0002-7270-1792, Laessig, Michael and Berg, Johannes (2012). GraphAlignment: Bayesian pairwise alignment of biological networks. BMC Syst. Biol., 6. LONDON: BMC. ISSN 1752-0509
2010
Luksza, Marta ORCID: 0000-0002-9520-1299, Laessig, Michael and Berg, Johannes (2010). Significance Analysis and Statistical Mechanics: An Application to Clustering. Phys. Rev. Lett., 105 (22). COLLEGE PK: AMER PHYSICAL SOC. ISSN 0031-9007