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Journal Article
Charmpi, Konstantina, Chokkalingam, Manopriya, Johnen, Ronja ORCID: 0000-0002-5150-5266 and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2021). Optimizing network propagation for multi-omics data integration. PLoS Comput. Biol., 17 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358
Charmpi, Konstantina, Guo, Tiannan, Zhong, Qing, Wagner, Ulrich, Sun, Rui, Toussaint, Nora C., Fritz, Christine E., Yuan, Chunhui, Chen, Hao, Rupp, Niels J., Christiansen, Ailsa, Rutishauser, Dorothea, Ruschoff, Jan H., Fankhauser, Christian, Saba, Karim, Poyet, Cedric, Hermanns, Thomas, Oehl, Kathrin, Moore, Ariane L., Beisel, Christian, Calzone, Laurence, Martignetti, Loredana, Zhang, Qiushi, Zhu, Yi, Martinez, Maria Rodriguez, Manica, Matteo, Haffner, Michael C., Aebersold, Ruedi, Wild, Peter J. and Beyer, Andreas (2020). Convergent network effects along the axis of gene expression during prostate cancer progression. Genome Biol., 21 (1). LONDON: BMC. ISSN 1474-760X
Guo, Tiannan ORCID: 0000-0003-3869-7651, Li, Li, Zhong, Qing ORCID: 0000-0002-5340-301X, Rupp, Niels J., Charmpi, Konstantina, Wong, Christine E., Wagner, Ulrich, Rueschoff, Jan H., Jochum, Wolfram, Fankhauser, Christian Daniel, Saba, Karim, Poyet, Cedric, Wild, Peter J., Aebersold, Ruedi and Beyer, Andreas ORCID: 0000-0002-3891-2123 (2018). Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers. Life Sci. Alliance, 1 (2). COLD SPRING HARBOR: LIFE SCIENCE ALLIANCE LLC. ISSN 2575-1077
Shao, Wenguang, Guo, Tiannan ORCID: 0000-0003-3869-7651, Toussaint, Nora C., Xue, Peng, Wagner, Ulrich, Li, Li, Charmpi, Konstantina, Zhu, Yi, Wu, Jianmin ORCID: 0000-0002-8876-128X, Buljan, Marija, Sun, Rui, Rutishauser, Dorothea ORCID: 0000-0003-2303-103X, Hermanns, Thomas, Fankhauser, Christian Daniel, Poyet, Cedric, Ljubicic, Jelena, Rupp, Niels, Ruschoff, Jan H., Zhong, Qing ORCID: 0000-0002-5340-301X, Beyer, Andreas ORCID: 0000-0002-3891-2123, Ji, Jiafu, Collins, Ben C., Liu, Yansheng, Ratsch, Gunnar, Wild, Peter J. and Aebersold, Ruedi (2019). Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins. Nat. Commun., 10. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723
Soste, Martin, Charmpi, Konstantina, Lampert, Fabienne, Gerez, Juan Atilio, van Oostrum, Marc ORCID: 0000-0001-8747-9787, Malinovska, Liliana, Boersema, Paul Jonathan, Prymaczok, Natalia Cecilia, Riek, Roland, Peter, Matthias, Vanni, Stefano ORCID: 0000-0003-2146-1140, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Picotti, Paola (2019). Proteomics-Based Monitoring of Pathway Activity Reveals that Blocking Diacylglycerol Biosynthesis Rescues from Alpha-Synuclein Toxicity. Cell Syst., 9 (3). S. 309 - 329. CAMBRIDGE: CELL PRESS. ISSN 2405-4720
Tognetti, Marco, Gabor, Attila, Yang, Mi, Cappelletti, Valentina, Windhager, Jonas ORCID: 0000-0002-2111-5291, Rueda, Oscar M., Charmpi, Konstantina, Esmaeilishirazifard, Elham, Bruna, Alejandra ORCID: 0000-0003-1214-9665, de Souza, Natalie, Caldas, Carlos, Beyer, Andreas, Picotti, Paola, Saez-Rodriguez, Julio ORCID: 0000-0002-8552-8976 and Bodenmiller, Bernd (2021). Deciphering the signaling network of breast cancer improves drug sensitivity prediction. Cell Syst., 12 (5). S. 401 - 431. CAMBRIDGE: CELL PRESS. ISSN 2405-4720