Universität zu Köln

Journal Article

Baar, Till ORCID: 0000-0002-6744-1463, Dümcke, Sebastian, Gressel, Saskia ORCID: 0000-0003-0261-675X, Schwalb, Björn ORCID: 0000-0003-2987-2622, Dilthey, Alexander ORCID: 0000-0002-6394-4581, Cramer, Patrick ORCID: 0000-0001-5454-7755, Tresch, Achim ORCID: 0000-0002-4146-6371 and Steinmetz, Lars M. ORCID: 0000-0002-3962-2865 (2022). RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history. G3 Genes|Genomes|Genetics, 12 (5). Oxford University Press. ISSN 2160-1836

Borck, Guntram, Hog, Friederike, Dentici, Maria Lisa, Tan, Perciliz L., Sowada, Nadine, Medeira, Ana, Gueneau, Lucie, Thiele, Holger, Kousi, Maria, Lepri, Francesca, Wenzeck, Larissa, Blumenthal, Ian, Radicioni, Antonio, Schwarzenberg, Tito Livio, Mandriani, Barbara ORCID: 0000-0002-4139-0602, Fischetto, Rita, Morris-Rosendahl, Deborah J., Altmuller, Janine, Reymond, Alexandre, Nurnberg, Peter, Merla, Giuseppe, Dallapiccola, Bruno ORCID: 0000-0002-5031-1013, Katsanis, Nicholas ORCID: 0000-0002-2480-0171, Cramer, Patrick and Kubisch, Christian ORCID: 0000-0003-4220-0978 (2015). BRF1 mutations alter RNA polymerase III-dependent transcription and cause neurodevelopmental anomalies. Genome Res., 25 (2). S. 155 - 167. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT. ISSN 1549-5469

Duemcke, Sebastian, Seizl, Martin, Etzold, Stefanie, Pirkl, Nicole, Martin, Dietmar E., Cramer, Patrick and Tresch, Achim (2012). One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. Nucleic Acids Res., 40 (18). S. 8883 - 8893. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Eser, Philipp, Demel, Carina, Maier, Kerstin C., Schwalb, Bjoern, Pirkl, Nicole, Martin, Dietmar E., Cramer, Patrick and Tresch, Achim (2014). Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression. Mol. Syst. Biol., 10 (1). HOBOKEN: WILEY. ISSN 1744-4292

Schwalb, Bjorn ORCID: 0000-0003-2987-2622, Michel, Margaux, Zacher, Benedikt, Fruehauf, Katja, Demel, Carina, Tresch, Achim, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Cramer, Patrick (2016). TT-seq maps the human transient transcriptome. Science, 352 (6290). S. 1225 - 1229. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE. ISSN 1095-9203

Zacher, Benedikt, Lidschreiber, Michael, Cramer, Patrick, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Tresch, Achim (2014). Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. Mol. Syst. Biol., 10 (12). HOBOKEN: WILEY-BLACKWELL. ISSN 1744-4292

Zacher, Benedikt, Michel, Margaux, Schwalb, Bjoern, Cramer, Patrick, Tresch, Achim and Gagneur, Julien ORCID: 0000-0002-8924-8365 (2017). Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN. PLoS One, 12 (1). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203