Universität zu Köln

Journal Article

Adlakha, Nidhi, Pfau, Thomas ORCID: 0000-0001-5048-2923, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 and Yazdani, Syed Shams (2015). Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008. Biotechnol. Biofuels, 8. LONDON: BMC. ISSN 1754-6834

Behle, Anna ORCID: 0000-0002-0244-0312, Dietsch, Maximilian ORCID: 0000-0001-6955-1298, Goldschmidt, Louis, Murugathas, Wandana, Berwanger, Lutz C., Burmester, Jonas ORCID: 0000-0002-7926-7183, Yao, Lun, Brandt, David ORCID: 0000-0002-8859-8646, Busche, Tobias, Kalinowski, Jorn, Hudson, Elton P., Ebenhoeh, Oliver, Axmann, Ilka M. and Machne, Rainer (2022). Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in Synechocystis. Nucleic Acids Res., 50 (22). S. 12790 - 12809. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Christian, Nils, Skupin, Alexander, Morante, Silvia ORCID: 0000-0002-3913-5733, Jansen, Karl, Rossi, Giancarlo ORCID: 0000-0001-9688-9454 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2014). Mesoscopic behavior from microscopic Markov dynamics and its application to calcium release channels. J. Theor. Biol., 343. S. 102 - 113. LONDON: ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD. ISSN 1095-8541

Christopher, Andrea, Hameister, Heike, Corrigall, Holly, Ebenhoeh, Oliver, Mueller, Berndt and Ullner, Ekkehard (2016). Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication. PLoS One, 11 (10). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398, Fucile, Geoffrey, Finazzi, Giovanni, Rochaix, Jean-David and Goldschmidt-Clermont, Michel (2014). Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model. Philos. Trans. R. Soc. B-Biol. Sci., 369 (1640). LONDON: ROYAL SOC. ISSN 1471-2970

Magni, Stefano ORCID: 0000-0001-8649-3616, Succurro, Antonella ORCID: 0000-0003-0227-2803, Skupin, Alexander and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2018). Data-driven dynamical model indicates that the heat shock response in Chlamydomonas reinhardtii is tailored to handle natural temperature variation. J. R. Soc. Interface, 15 (142). LONDON: ROYAL SOC. ISSN 1742-5662

Moejes, Fiona Wanjiku ORCID: 0000-0002-7464-7590, Matuszynska, Anna ORCID: 0000-0003-0882-6088, Adhikari, Kailash, Bassi, Roberto, Cariti, Federica ORCID: 0000-0002-1970-9832, Cogne, Guillaume, Dikaios, Ioannis ORCID: 0000-0002-8575-7998, Falciatore, Angela, Finazzi, Giovanni, Flori, Serena ORCID: 0000-0003-3407-2785, Goldschmidt-Clermont, Michel, Magni, Stefano ORCID: 0000-0001-8649-3616, Maguire, Julie, Le Monnier, Adeline, Mueller, Kathrin, Poolman, Mark, Singh, Dipali, Spelberg, Stephanie, Stella, Giulio Rocco, Succurro, Antonella ORCID: 0000-0003-0227-2803, Taddei, Lucilla, Urbain, Brieuc, Villanova, Valeria, Zabke, Claudia and Ebenhoeh, Oliver (2017). A systems-wide understanding of photosynthetic acclimation in algae and higher plants. J. Exp. Bot., 68 (11). S. 2667 - 2682. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2431

Moejes, Fiona Wanjiku ORCID: 0000-0002-7464-7590, Succurro, Antonella ORCID: 0000-0003-0227-2803, Popa, Ovidiu, Maguire, Julie and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2017). Dynamics of the Bacterial Community Associated with Phaeodactylum tricornutum Cultures. Processes, 5 (4). BASEL: MDPI AG. ISSN 2227-9717

Pfau, Thomas, Christian, Nils, Masakapalli, Shyam K., Sweetlove, Lee J., Poolman, Mark G. and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2018). The intertwined metabolism during symbiotic nitrogen fixation elucidated by metabolic modelling. Sci Rep, 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Pokhilko, Alexandra and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2015). Mathematical modelling of diurnal regulation of carbohydrate allocation by osmo-related processes in plants. J. R. Soc. Interface, 12 (104). LONDON: ROYAL SOC. ISSN 1742-5662

Pokhilko, Alexandra and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2015). Mathematical modelling of diurnal regulation of carbohydrate allocation by osmo-related processes in plants. J. R. Soc. Interface, 12 (104). LONDON: ROYAL SOC. ISSN 1742-5662

Pokhilko, Alexandra, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398, Stark, W. Marshall and Colloms, Sean D. (2018). Mathematical model of a serine integrase-controlled toggle switch with a single input. J. R. Soc. Interface, 15 (143). LONDON: ROYAL SOC. ISSN 1742-5662

Pokhilko, Alexandra, Flis, Anna ORCID: 0000-0002-9142-1606, Sulpice, Ronan ORCID: 0000-0002-6113-9570, Stitt, Mark ORCID: 0000-0002-4900-1763 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2014). Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Mol. Biosyst., 10 (3). S. 613 - 628. CAMBRIDGE: ROYAL SOC CHEMISTRY. ISSN 1742-2051

Pokhilko, Alexandra, Zhao, Jia, Ebenhoeh, Oliver, Smith, Margaret C. M., Stark, W. Marshall and Colloms, Sean D. (2016). The mechanism of phi C31 integrase directionality: experimental analysis and computational modelling. Nucleic Acids Res., 44 (15). S. 7360 - 7373. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Pokhilko, Alexandra, Zhao, Jia, Stark, W. Marshall, Colloms, Sean D. and Ebenhoeh, Oliver (2017). A simplified mathematical model of directional DNA site-specific recombination by serine integrases. J. R. Soc. Interface, 14 (126). LONDON: ROYAL SOC. ISSN 1742-5662

Saadat, Nima P., Nies, Tim ORCID: 0000-0003-1587-2971, Rousset, Yvan ORCID: 0000-0002-9118-7178 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2020). Thermodynamic Limits and Optimality of Microbial Growth. Entropy, 22 (3). BASEL: MDPI. ISSN 1099-4300

Saadat, Nima P., van Aalst, Marvin ORCID: 0000-0002-7434-0249 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2022). Network Reconstruction and Modelling Made Reproducible with moped. Metabolites, 12 (4). BASEL: MDPI. ISSN 2218-1989

Singh, Dipali, Nedbal, Ladislav and Ebenhoeh, Oliver (2018). Modelling phosphorus uptake in microalgae. Biochem. Soc. Trans., 46. S. 483 - 491. LONDON: PORTLAND PRESS LTD. ISSN 1470-8752

Succurro, Antonella ORCID: 0000-0003-0227-2803 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2018). Review and perspective on mathematical modeling of microbial ecosystems. Biochem. Soc. Trans., 46. S. 403 - 413. LONDON: PORTLAND PRESS LTD. ISSN 1470-8752

Succurro, Antonella ORCID: 0000-0003-0227-2803, Moejes, Fiona Wanjiku ORCID: 0000-0002-7464-7590 and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2017). A Diverse Community To Study Communities: Integration of Experiments and Mathematical Models To Study Microbial Consortia. J. Bacteriol., 199 (15). WASHINGTON: AMER SOC MICROBIOLOGY. ISSN 1098-5530

Succurro, Antonella ORCID: 0000-0003-0227-2803, Segre, Daniel and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2019). Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth. mSystems, 4 (1). WASHINGTON: AMER SOC MICROBIOLOGY. ISSN 2379-5077

Tacchino, Francesco ORCID: 0000-0003-2008-5956, Succurro, Antonella ORCID: 0000-0003-0227-2803, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 and Gerace, Dario (2019). Optimal efficiency of the Q-cycle mechanism around physiological temperatures from an open quantum systems approach. Sci Rep, 9. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Wilken, St Elmo, Frazao, Victor Vera, Saadat, Nima P. and Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398 (2021). The view of microbes as energy converters illustrates the trade-off between growth rate and yield. Biochem. Soc. Trans., 49 (4). S. 1663 - 1675. LONDON: PORTLAND PRESS LTD. ISSN 1470-8752

Zhao, Jia, Pokhilko, Alexandra, Ebenhoeh, Oliver ORCID: 0000-0002-7229-7398, Rosser, Susan J. and Colloms, Sean D. (2019). A single-input binary counting module based on serine integrase site-specific recombination. Nucleic Acids Res., 47 (9). S. 4896 - 4910. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962