Universität zu Köln

Journal Article

Braun, Till, Glass, Markus ORCID: 0000-0003-2718-8907, Wahnschaffe, Linus, Otte, Moritz, Mayer, Petra, Franitza, Marek, Altmuller, Janine ORCID: 0000-0003-4372-1521, Hallek, Michael ORCID: 0000-0002-7425-4455, Huttelmaier, Stefan, Schrader, Alexandra and Herling, Marco (2022). Micro-RNA networks in T-cell prolymphocytic leukemia reflect T-cell activation and shape DNA damage response and survival pathways. Haematologica, 107 (1). S. 187 - 201. PAVIA: FERRATA STORTI FOUNDATION. ISSN 0390-6078

Braun, Till, Stachelscheid, Johanna ORCID: 0000-0001-7419-8900, Bley, Nadine, Oberbeck, Sebastian, Otte, Moritz, Muller, Tony Andreas, Wahnschaffe, Linus, Glass, Markus ORCID: 0000-0003-2718-8907, Ommer, Katharina, Franitza, Marek, Gathof, Birgit, Altmueller, Janine, Hallek, Michael ORCID: 0000-0002-7425-4455, Auguin, Daniel ORCID: 0000-0003-4713-9096, Huettelmaier, Stefan, Schrader, Alexandra and Herling, Marco (2022). Noncanonical Function of AGO2 Augments T-cell Receptor Signaling in T-cell Prolymphocytic Leukemia. Cancer Res., 82 (9). S. 1818 - 1832. PHILADELPHIA: AMER ASSOC CANCER RESEARCH. ISSN 1538-7445

Claushuis, Theodora A. M., van Vught, Lonneke A., Scicluna, Brendon P., Wiewel, Maryse A., Klouwenberg, Peter M. C. Klein, Hoogendijk, Arie J., Ong, David S. Y., Cremer, Olaf L., Horn, Janneke, Franitza, Marek, Toliat, Mohammad R., Nuernberg, Peter, Zwinderman, Aeilko H., Bonten, Marc J., Schultz, Marcus J. and van der Poll, Tom (2016). Thrombocytopenia is associated with a dysregulated host response in critically ill sepsis patients. Blood, 127 (24). S. 3062 - 3073. WASHINGTON: AMER SOC HEMATOLOGY. ISSN 1528-0020

Fessler, Evelyn, Drost, Jarno ORCID: 0000-0002-2941-6179, van Hooff, Sander R., Linnekamp, Janneke F., Wang, Xin ORCID: 0000-0002-5122-2418, Jansen, Marnix, Melo, Felipe De Sousa E., Prasetyanti, Pramudita R., Ijspeert, Joep E. G., Franitza, Marek, Nurnberg, Peter, van Noesel, Carel J. M., Dekker, Evelien, Vermeulen, Louis ORCID: 0000-0002-6066-789X, Clevers, Hans and Medema, Jan Paul (2016). TGF beta signaling directs serrated adenomas to the mesenchymal colorectal cancer subtype. EMBO Mol. Med., 8 (7). S. 745 - 761. HOBOKEN: WILEY. ISSN 1757-4684

Harr, Bettina, Karakoc, Emre, Neme, Rafik ORCID: 0000-0001-8462-5291, Teschke, Meike, Pfeifle, Christine, Pezer, Zeljka, Babiker, Hiba, Linnenbrink, Miriam, Montero, Inka, Scavetta, Rick, Abai, Mohammad Reza, Puente Molins, Marta, Schlegel, Mathias, Ulrich, Rainer G., Altmueller, Janine, Franitza, Marek, Buentge, Anna, Kuenzel, Sven and Tautz, Diethard ORCID: 0000-0002-0460-5344 (2016). Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Sci. Data, 3. LONDON: NATURE PUBLISHING GROUP. ISSN 2052-4463

Huson, Michaela A. M., Scicluna, Brendon P., van Vught, Lonneke A., Wiewel, Maryse A., Hoogendijk, Arie J., Cremer, Olaf L., Bonten, Marc J. M., Schultz, Marcus J., Franitza, Marek, Toliat, Mohammad R., Nuernberg, Peter, Grobusch, Martin P. and van der Poll, Tom (2016). The Impact of HIV Co-Infection on the Genomic Response to Sepsis. PLoS One, 11 (2). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Izquierdo, Elena, Vorholt, Daniela, Blakemore, Stuart, Sackey, Benedict ORCID: 0000-0003-1016-7720, Nolte, Janica L., Barbarino, Verena, Schmitz, Jan, Nickel, Nadine, Bachurski, Daniel ORCID: 0000-0001-9168-9680, Lobastova, Liudmila, Nikolic, Milos, Michalik, Michael, Brinker, Reinhild, Merkel, Olaf, Franitza, Marek, Georgomanolis, Theodoros, Neuhaus, Rene, Koch, Maximilian, Nasada, Niklas, Knittel, Gero, Chapuy, Bjoern ORCID: 0000-0002-6485-8773, Ludwig, Nicole, Meese, Eckart, Frenzel, Lukas, Reinhardt, Hans Christian, Peifer, Martin ORCID: 0000-0002-5243-5503, Rebollido-Rios, Rocio, Bruns, Heiko, Krueger, Marcus, Hallek, Michael and Pallasch, Christian P. (2022). Extracellular vesicles and PD-L1 suppress macrophages, inducing therapy resistance in TP53-deficient B-cell malignancies. Blood, 139 (25). S. 3617 - 3630. WASHINGTON: AMER SOC HEMATOLOGY. ISSN 1528-0020

Khan, Hina N., Perlee, Desiree, Schoenmaker, Lieke, Van Der Meer, Anne-Jan, Franitza, Marek, Toliat, Mohammad Reza, Nuernberg, Peter, Zwinderman, Aeilko H., van Der Poll, Tom and Scicluna, Brendon P. (2019). Leukocyte transcriptional signatures dependent on LPS dosage in human endotoxemia. J. Leukoc. Biol., 106 (5). S. 1153 - 1161. HOBOKEN: WILEY. ISSN 1938-3673

Kraemer, Max, Plum, Patrick S. ORCID: 0000-0002-8165-4553, Camacho, Oscar Velazquez, Folz-Donahue, Kat, Thelen, Martin ORCID: 0000-0002-2785-9726, Garcia-Marquez, Isabel, Woelwer, Christina, Buesker, Soeren, Wittig, Jana, Franitza, Marek, Altmueller, Janine, Loeser, Heike, Schloesser, Hans, Buettner, Reinhard, Schroeder, Wolfgang, Bruns, Christiane J., Alakus, Hakan, Quaas, Alexander, Chon, Seung-Hun ORCID: 0000-0002-8923-6428 and Hillmer, Axel M. (2020). Cell type-specific transcriptomics of esophageal adenocarcinoma as a scalable alternative for single cell transcriptomics. Mol. Oncol., 14 (6). S. 1170 - 1185. HOBOKEN: WILEY. ISSN 1878-0261

Lanver, Daniel, Mueller, Andre N., Happel, Petra, Schweizer, Gabriel ORCID: 0000-0002-8679-4598, Haas, Fabian B., Franitza, Marek, Pellegrin, Clement ORCID: 0000-0002-6591-655X, Reissmann, Stefanie, Altmueller, Janine, Rensing, Stefan A. and Kahmann, Regine (2018). The Biotrophic Development of Ustilago maydis Studied by RNA-Seq Analysis. Plant Cell, 30 (2). S. 300 - 324. ROCKVILLE: AMER SOC PLANT BIOLOGISTS. ISSN 1532-298X

Linnekamp, Janneke F., van Hooff, Sander R., Prasetyanti, Pramudita R., Kandimalla, Raju ORCID: 0000-0002-0342-5229, Buikhuisen, Joyce Y., Fessler, Evelyn, Ramesh, Prashanthi, Lee, Kelly A. S. T., Bochove, Grehor G. W., de Jong, Johan H., Cameron, Kate, van Leersum, Ronald, Rodermond, Hans M., Franitza, Marek, Nuernberg, Peter, Mangiapane, Laura R., Wang, Xin, Clevers, Hans, Vermeulen, Louis, Stassi, Giorgio and Medema, Jan Paul (2018). Consensus molecular subtypes of colorectal cancer are recapitulated in in vitro and in vivo models. Cell Death Differ., 25 (3). S. 616 - 634. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-5403

Patil, Paurnima, Cieslak, Agata ORCID: 0000-0003-1015-9448, Bernhart, Stephan H., Toprak, Umut H., Wagener, Rabea, Lopez, Cristina ORCID: 0000-0001-6644-1659, Wiehle, Laura ORCID: 0000-0001-6081-3925, Bens, Susanne, Altmueller, Janine, Franitza, Marek, Scholz, Ingrid, Jayne, Sandrine, Ahearne, Matthew J., Scheffold, Annika, Jebaraj, Billy M. C., Schneider, Christof, Costa, Dolors, Braun, Till, Schrader, Alexandra, Campo, Elias, Dyer, Martin J. S., Nuernberg, Peter, Duerig, Jan, Johansson, Patricia, Boettcher, Sebastian, Schlesner, Matthias, Herling, Marco, Stilgenbauer, Stephan, Macintyre, Elizabeth and Siebert, Reiner (2020). Reconstruction of rearranged T-cell receptor loci by whole genome and transcriptome sequencing gives insights into the initial steps of T-cell prolymphocytic leukemia. Gene Chromosomes Cancer, 59 (4). S. 261 - 268. HOBOKEN: WILEY. ISSN 1098-2264

Prasetyanti, Pramudita R., van Hooff, Ander R., van Herwaarden, Tessa, de Vries, Nathalie, Kalloe, Kieshen, Rodermond, Hans, van Leersum, Ronald, de Jong, Joan H., Franitza, Marek, Nuernberg, Peter, Todaro, Matilde, Stassi, Giorgio and Medema, Jan Paul (2019). Capturing colorectal cancer inter-tumor heterogeneity in patient-derived xenograft (PDX) models. Int. J. Cancer, 144 (2). S. 366 - 372. HOBOKEN: WILEY. ISSN 1097-0215

Scicluna, Brendon P., Klouwenberg, Peter M. C. Klein, van Vught, Lonneke A., Wiewel, Maryse A., Ong, David S. Y., Zwinderman, Aeilko H., Franitza, Marek, Toliat, Mohammad R., Nuernberg, Peter, Hoogendijk, Arie J., Horn, Janneke, Cremer, Olaf L., Schultz, Marcus J., Bonten, Marc J. and van der Poll, Tom (2015). A Molecular Biomarker to Diagnose Community-acquired Pneumonia on Intensive Care Unit Admission. Am. J. Respir. Crit. Care Med., 192 (7). S. 826 - 836. NEW YORK: AMER THORACIC SOC. ISSN 1535-4970

Scicluna, Brendon P., Uhel, Fabrice, van Vught, Lonneke A., Wiewel, Maryse A., Hoogendijk, Arie J., Baessman, Ingelore, Franitza, Marek, Nuernberg, Peter, Horn, Janneke, Cremer, Olaf L., Bonten, Marc J., Schultz, Marcus J. and van der Poll, Tom (2020). The leukocyte non-coding RNA landscape in critically ill patients with sepsis. eLife, 9. CAMBRIDGE: ELIFE SCIENCES PUBLICATIONS LTD. ISSN 2050-084X

Scicluna, Brendon P., Wiewel, Maryse A., van Vught, Lonneke A., Hoogendijk, Arie J., Klarenbeek, Augustijn M., Franitza, Marek, Toliat, Mohammad R., Nuernberg, Peter, Horn, Janneke, Bonten, Marc J., Schultz, Marcus J., Cremer, Olaf L. and van der Poll, Tom (2018). Molecular Biomarker to Assist in Diagnosing Abdominal Sepsis upon ICU Admission. Am. J. Respir. Crit. Care Med., 197 (8). S. 1070 - 1074. NEW YORK: AMER THORACIC SOC. ISSN 1535-4970

Yigit, Goekhan, Saida, Ken, DeMarzo, Danielle, Miyake, Noriko, Fujita, Atsushi, Yang Tan, Tiong, White, Susan M., Wadley, Alexandrea, Toliat, Mohammad R., Motameny, Susanne, Franitza, Marek, Stutterd, Chloe A., Chong, Pin F., Kira, Ryutaro ORCID: 0000-0002-6878-5081, Sengoku, Toru ORCID: 0000-0001-9461-8714, Ogata, Kazuhiro, Guillen Sacoto, Maria J., Fresen, Christine, Beck, Bodo B., Nuernberg, Peter, Dieterich, Christoph, Wollnik, Bernd, Matsumoto, Naomichi and Altmueller, Janine (2020). The recurrent postzygotic pathogenic variant p.Glu47Lys in RHOA causes a novel recognizable neuroectodermal phenotype. Hum. Mutat., 41 (3). S. 591 - 600. HOBOKEN: WILEY. ISSN 1098-1004

van Vught, Lonneke A., Scicluna, Brendon P., Wiewel, Maryse A., Hoogendijk, Arie J., Klouwenberg, Peter M. C. Klein, Franitza, Marek, Toliat, Mohammad R., Nuernberg, Peter, Cremer, Olaf L., Horn, Janneke, Schultz, Marcus J., Bonten, Marc M. J. and van der Poll, Tom (2016). Comparative Analysis of the Host Response to Community-acquired and Hospital-acquired Pneumonia in Critically Ill Patients. Am. J. Respir. Crit. Care Med., 194 (11). S. 1366 - 1375. NEW YORK: AMER THORACIC SOC. ISSN 1535-4970

van Vught, Lonneke A., Scicluna, Brendon P., Wiewel, Maryse A., Hoogendijk, Arie J., Klouwenberg, Peter M. C. Klein, Ong, David S. Y., Cremer, Olaf L., Horn, Janneke, Franitza, Marek, Toliat, Mohammad R., Nuernberg, Peter, Bonten, Marc M. J., Schultz, Marcus J. and van der Poll, Tom (2017). Association of Gender With Outcome and Host Response in Critically Ill Sepsis Patients. Crit. Care Med., 45 (11). S. 1854 - 1863. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS. ISSN 1530-0293