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2021
Di Cristanziano, Veronica, Farowski, Fedja, Berrilli, Federica, Santoro, Maristella, Di Cave, David, Gle, Christophe, Daeumer, Martin, Thielen, Alexander, Wirtz, Maike, Kaiser, Rolf, Eberhardt, Kirsten Alexandra, Vehreschild, Maria J. G. T. and D'Alfonso, Rossella (2021). Analysis of Human Gut Microbiota Composition Associated to the Presence of Commensal and Pathogen Microorganisms in Cote d'Ivoire. Microorganisms, 9 (8). BASEL: MDPI. ISSN 2076-2607
Marty, Nina, Saeng-Aroon, Siriphan, Heger, Eva, Thielen, Alexander, Obermeier, Martin, Pfeifer, Nico, Kaiser, Rolf and Klimkait, Thomas 
ORCID: 0000-0003-4945-6511
(2021).
Adapting the geno2pheno[coreceptor] tool to HIV-1 subtype CRF01_AE by phenotypic validation using clinical isolates from South-East Asia.
J. Clin. Virol., 136.
AMSTERDAM:
ELSEVIER.
ISSN 1873-5967
2018
Doering, Matthias, Buech, Joachim, Friedrich, Georg, Pironti, Alejandro, Kalaghatgi, Prabhav, Knops, Elena, Heger, Eva, Obermeier, Martin, Daeumer, Martin, Thielen, Alexander, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640 and Pfeifer, Nico
(2018).
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data.
Nucleic Acids Res., 46 (W1).
S. W271 - 7.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1362-4962
2011
Sierra, Saleta, Kaiser, Rolf, Luebke, Nadine, Thielen, Alexander, Schuelter, Eugen, Heger, Eva, Daeumer, Martin, Reuter, Stefan, Esser, Stefan, Faetkenheuer, Gerd, Pfister, Herbert, Oette, Mark and Lengauer, Thomas (2011). Prediction of HIV-1 Coreceptor Usage (Tropism) by Sequence Analysis using a Genotypic Approach. J. Vis. Exp. (58). CAMBRIDGE: JOURNAL OF VISUALIZED EXPERIMENTS. ISSN 1940-087X
2010
Thielen, Alexander, Sichtig, Nadine, Kaiser, Rolf, Lam, Jeffrey, Harrigan, P. Richard and Lengauer, Thomas (2010). Improved Prediction of HIV-1 Coreceptor Usage with Sequence Information from the Second Hypervariable Loop of gp120. J. Infect. Dis., 202 (9). S. 1435 - 1444. CARY: OXFORD UNIV PRESS INC. ISSN 1537-6613