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Number of items: 38.

Journal Article

Baar, Till ORCID: 0000-0002-6744-1463, Dümcke, Sebastian, Gressel, Saskia ORCID: 0000-0003-0261-675X, Schwalb, Björn ORCID: 0000-0003-2987-2622, Dilthey, Alexander ORCID: 0000-0002-6394-4581, Cramer, Patrick ORCID: 0000-0001-5454-7755, Tresch, Achim ORCID: 0000-0002-4146-6371 and Steinmetz, Lars M. ORCID: 0000-0002-3962-2865 (2022). RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history. G3 Genes|Genomes|Genetics, 12 (5). Oxford University Press. ISSN 2160-1836

Beil-Wagner, Jane ORCID: 0000-0003-1853-8303, Doessinger, Georg, Schober, Kilian ORCID: 0000-0001-9323-9472, vom Berg, Johannes, Tresch, Achim, Grandl, Martina, Palle, Pushpalatha, Mair, Florian ORCID: 0000-0001-6732-5449, Gerhard, Markus ORCID: 0000-0001-9110-3950, Becher, Burkhard ORCID: 0000-0002-1541-7867, Busch, Dirk H. and Buch, Thorsten ORCID: 0000-0002-2236-9074 (2016). T cell-specific inactivation of mouse CD2 by CRISPR/Cas9. Sci Rep, 6. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Buch, Thorsten ORCID: 0000-0002-2236-9074, Moos, Katharina, Ferreira, Filipa M., Foehlic, Holger, Gebhard, Catherine ORCID: 0000-0001-7240-5822 and Tresch, Achim ORCID: 0000-0002-4146-6371 (2019). Benefits of a factorial design focusing on inclusion of female and male animals in one experiment. J. Mol. Med., 97 (6). S. 871 - 878. HEIDELBERG: SPRINGER HEIDELBERG. ISSN 1432-1440

Buch, Thorsten ORCID: 0000-0002-2236-9074, Moos, Katharina, Ferreira, Filipa M. ORCID: 0000-0003-2465-3121, Fröhlich, Holger ORCID: 0000-0002-5328-1243, Gebhard, Catherine ORCID: 0000-0001-7240-5822 and Tresch, Achim ORCID: 0000-0002-4146-6371 (2019). Benefits of a factorial design focusing on inclusion of female and male animals in one experiment. Journal of Molecular Medicine, 97 (6). pp. 871-877. Springer Nature. ISSN 0946-2716

Cartolano, Maria ORCID: 0000-0001-9830-988X, Pieper, Bjorn, Lempe, Janne ORCID: 0000-0002-3890-6997, Tattersall, Alex, Huijser, Peter, Tresch, Achim, Darrah, Peter R., Hay, Angela and Tsiantis, Miltos (2015). Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proc. Natl. Acad. Sci. U. S. A., 112 (33). S. 10539 - 10545. WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Duemcke, Sebastian, Braeuer, Johannes, Anchang, Benedict, Spang, Rainer ORCID: 0000-0002-1326-4297, Beerenwinkel, Niko and Tresch, Achim (2014). Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinformatics, 30 (3). S. 414 - 420. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

Duemcke, Sebastian, Mansmann, Ulrich and Tresch, Achim (2014). A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours. PLoS One, 9 (10). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Duemcke, Sebastian, Seizl, Martin, Etzold, Stefanie, Pirkl, Nicole, Martin, Dietmar E., Cramer, Patrick and Tresch, Achim (2012). One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. Nucleic Acids Res., 40 (18). S. 8883 - 8893. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Dursun, Ezgi, Endele, Max, Musumeci, Andrea ORCID: 0000-0002-2497-0699, Failmezger, Henrik, Wang, Shu-Hung, Tresch, Achim, Schroeder, Timm and Krug, Anne B. (2016). Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors. Sci Rep, 6. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Engelhardt, Alexander, Rieger, Anna, Tresch, Achim and Mansmann, Ulrich (2016). Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm. Hum. Hered., 82 (1-2). S. 1 - 16. BASEL: KARGER. ISSN 1423-0062

Eser, Philipp, Demel, Carina, Maier, Kerstin C., Schwalb, Bjoern, Pirkl, Nicole, Martin, Dietmar E., Cramer, Patrick and Tresch, Achim (2014). Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression. Mol. Syst. Biol., 10 (1). HOBOKEN: WILEY. ISSN 1744-4292

Failmezger, Henrik, Dursun, Ezgi, Dümcke, Sebastian, Endele, Max, Poron, Don, Schroeder, Timm ORCID: 0000-0001-9320-0252, Krug, Anne ORCID: 0000-0002-9556-7207 and Tresch, Achim ORCID: 0000-0002-4146-6371 (2019). Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging. Bioinformatics, 35 (13). S. 2291 - 2300. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

Failmezger, Henrik, Froehlich, Holger and Tresch, Achim (2013). Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinformatics, 14. LONDON: BMC. ISSN 1471-2105

Failmezger, Henrik, Lempe, Janne ORCID: 0000-0002-3890-6997, Khadem, Nasim, Cartolano, Maria, Tsiantis, Miltos and Tresch, Achim (2018). MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods, 14. LONDON: BMC. ISSN 1746-4811

Failmezger, Henrik, Zwing, Natalie, Tresch, Achim ORCID: 0000-0002-4146-6371, Korski, Konstanty and Schmich, Fabian (2021). Computational Tumor Infiltration Phenotypes Enable the Spatial and Genomic Analysis of Immune Infiltration in Colorectal Cancer. Front. Oncol., 11. LAUSANNE: FRONTIERS MEDIA SA. ISSN 2234-943X

Failmezger, Henrik, Zwing, Natalie, Tresch, Achim ORCID: 0000-0002-4146-6371, Korski, Konstanty and Schmich, Fabian ORCID: 0000-0003-1604-4406 (2021). Computational Tumor Infiltration Phenotypes Enable the Spatial and Genomic Analysis of Immune Infiltration in Colorectal Cancer. Frontiers in Oncology, 11. Frontiers Media. ISSN 2234-943X

Glas, Julia, Duemcke, Sebastian, Zacher, Benedikt, Poron, Don, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Tresch, Achim (2016). Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. Nucleic Acids Res., 44 (5). OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Hoffman, Arthur, Korczynski, Oliver, Tresch, Achim, Hansen, Torsten, Rahman, Farreed, Goetz, Martin, Murthy, Sanyaj, Galle, Peter R. and Kiesslich, Ralf (2014). Acetic acid compared with i-scan imaging for detecting Barrett's esophagus: a randomized, comparative trial. Gastrointest. Endosc., 79 (1). S. 46 - 55. NEW YORK: MOSBY-ELSEVIER. ISSN 1097-6779

Hussainy, Mohammad ORCID: 0000-0002-4849-8894, Korsching, Sigrun, I and Tresch, Achim (2022). Pseudotime analysis reveals novel regulatory factors for multigenic onset and monogenic transition of odorant receptor expression. Sci Rep, 12 (1). BERLIN: NATURE PORTFOLIO. ISSN 2045-2322

Locatelli, Giuseppe ORCID: 0000-0002-2179-4407, Marques-Ferreira, Filipa, Katsoulas, Antonis, Kalaitzaki, Vasileia ORCID: 0000-0002-4158-2321, Krueger, Martin, Ingold-Heppner, Barbara, Walthert, Sabrina, Sankowski, Roman, da Costa, Olivia Prazeres, Dolga, Amalia ORCID: 0000-0001-5400-5614, Huber, Magdalena, Gold, Maike, Culmsee, Carsten, Waisman, Ari, Bechmann, Ingo, Milchevskaya, Vladislava, Prinz, Marco, Tresch, Achim, Becher, Burkhard ORCID: 0000-0002-1541-7867 and Buch, Thorsten ORCID: 0000-0002-2236-9074 . IGF1R expression by adult oligodendrocytes is not required in the steady-state but supports neuroinflammation. Glia. HOBOKEN: WILEY. ISSN 1098-1136

Mehta, Aditi, Cordero, Julio, Dobersch, Stephanie, Romero-Olmedo, Addi J., Savai, Rajkumar, Bodner, Johannes, Chao, Cho-Ming, Fink, Ludger, Guzman-Diaz, Ernesto, Singh, Indrabahadur ORCID: 0000-0002-1474-7928, Dobreva, Gergana ORCID: 0000-0002-4814-9416, Rapp, Ulf R., Guenther, Stefan, Ilinskaya, Olga N., Bellusci, Saverio, Dammann, Reinhard H., Braun, Thomas ORCID: 0000-0002-6165-4804, Seeger, Werner ORCID: 0000-0003-1946-0894, Gattenloehner, Stefan, Tresch, Achim, Guenther, Andreas and Barreto, Guillermo ORCID: 0000-0002-7777-4712 (2016). Non-invasive lung cancer diagnosis by detection of GATA6 and NKX2-1 isoforms in exhaled breath condensate. EMBO Mol. Med., 8 (12). S. 1380 - 1390. HOBOKEN: WILEY. ISSN 1757-4684

Möllenhoff, Kathrin ORCID: 0000-0001-7861-3892 and Tresch, Achim ORCID: 0000-0002-4146-6371 (2023). Investigating non-inferiority or equivalence in time-to-event data under non-proportional hazards. Lifetime Data Analysis, 29 (3). pp. 483-507. Springer Nature. ISSN 1380-7870

Nguyen-Tat, Marc, Cornelius, Constantin, Hoffman, Arthur, Tresch, Achim, Krey, Joerg, Kiesslich, Ralf, Galle, Peter Robert and Rey, Johannes Wilhelm (2018). The Manchester Triage System (MTS): a score for emergency management of patients with acute gastrointestinal bleeding. Z. Gastroent., 56 (5). S. 479 - 488. STUTTGART: GEORG THIEME VERLAG KG. ISSN 1439-7803

Niederberger, Theresa, Failmezger, Henrik, Uskat, Diana, Poron, Don, Glauche, Ingmar, Scherf, Nico ORCID: 0000-0003-4003-9121, Roeder, Ingo, Schroeder, Timm ORCID: 0000-0001-9320-0252 and Tresch, Achim (2015). Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinformatics, 31 (11). S. 1816 - 1824. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

Rey, Johannes Wilhelm, Duemcke, Sebastian, Haschemi, Jafer, Tresch, Achim, Borger, Dietmar, Kirchner, Ann-Christin, Teubner, Daniel, Kiesslich, Ralf and Hoffman, Arthur (2018). G-EYE advanced colonoscopy for improved polyp detection rates - a randomized tandem pilot study with different endoscopists. Z. Gastroent., 56 (5). S. 488 - 495. STUTTGART: GEORG THIEME VERLAG KG. ISSN 1439-7803

Schlusche, Anna Katharina, Vay, Sabine Ulrike ORCID: 0000-0002-3289-7807, Kleinenkuhnen, Niklas, Sandke, Steffi, Campos-Martin, Rafael ORCID: 0000-0002-1395-8571, Florio, Marta, Huttner, Wieland, Tresch, Achim ORCID: 0000-0002-4146-6371, Roeper, Jochen, Rueger, Maria Adele, Jakovcevski, Igor, Stockebrand, Malte and Isbrandt, Dirk ORCID: 0000-0002-4720-1016 (2021). Developmental HCN channelopathy results in decreased neural progenitor proliferation and microcephaly in mice. Proc. Natl. Acad. Sci. U. S. A., 118 (35). WASHINGTON: NATL ACAD SCIENCES. ISSN 1091-6490

Schlusche, Anna Katharina ORCID: 0000-0002-0111-665X, Vay, Sabine Ulrike ORCID: 0000-0002-3289-7807, Kleinenkuhnen, Niklas, Sandke, Steffi, Campos-Martin, Rafael ORCID: 0000-0002-1395-8571, Florio, Marta ORCID: 0000-0002-6168-005X, Huttner, Wieland ORCID: 0000-0003-4143-7201, Tresch, Achim ORCID: 0000-0002-4146-6371, Roeper, Jochen ORCID: 0000-0003-2145-8742, Rueger, Maria Adele ORCID: 0000-0001-8036-395X, Jakovcevski, Igor ORCID: 0000-0002-0132-4985, Stockebrand, Malte ORCID: 0000-0001-9009-137X and Isbrandt, Dirk ORCID: 0000-0002-4720-1016 (2021). Developmental HCN channelopathy results in decreased neural progenitor proliferation and microcephaly in mice. Proceedings of the National Academy of Sciences, 118 (35). NAS. ISSN 0027-8424

Schmidt, Christine S., Bultmann, Sebastian, Meilinger, Daniela, Zacher, Benedikt, Tresch, Achim, Maier, Kerstin C., Peter, Christian, Martin, Dietmar E., Leonhardt, Heinrich and Spada, Fabio ORCID: 0000-0002-7148-9013 (2012). Global DNA Hypomethylation Prevents Consolidation of Differentiation Programs and Allows Reversion to the Embryonic Stem Cell State. PLoS One, 7 (12). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Schwalb, Bjorn ORCID: 0000-0003-2987-2622, Michel, Margaux, Zacher, Benedikt, Fruehauf, Katja, Demel, Carina, Tresch, Achim, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Cramer, Patrick (2016). TT-seq maps the human transient transcriptome. Science, 352 (6290). S. 1225 - 1229. WASHINGTON: AMER ASSOC ADVANCEMENT SCIENCE. ISSN 1095-9203

Schwarzer, Robin, Jiao, Huipeng, Wachsmuth, Laurens, Tresch, Achim and Pasparakis, Manolis ORCID: 0000-0002-9870-0966 (2020). FADD and Caspase-8 Regulate Gut Homeostasis and Inflammation by Controlling MLKL- and GSDMD-Mediated Death of Intestinal Epithelial Cells. Immunity, 52.

Schwarzer, Robin, Jiao, Huipeng ORCID: 0000-0001-9632-6176, Wachsmuth, Laurens ORCID: 0000-0003-1701-9384, Tresch, Achim ORCID: 0000-0002-4146-6371 and Pasparakis, Manolis ORCID: 0000-0002-9870-0966 (2020). FADD and Caspase-8 Regulate Gut Homeostasis and Inflammation by Controlling MLKL- and GSDMD-Mediated Death of Intestinal Epithelial Cells. Immunity, 52 (6). 978-993.e6. Cell Press. ISSN 1074-7613

Steffens, Alexandra, Jaegle, Benjamin, Tresch, Achim, Huelskamp, Martin and Jakoby, Marc (2014). Processing-Body Movement in Arabidopsis Depends on an Interaction between Myosins and DECAPPING PROTEIN1([W]). Plant Physiol., 164 (4). S. 1879 - 1893. ROCKVILLE: AMER SOC PLANT BIOLOGISTS. ISSN 1532-2548

Stricker, Georg ORCID: 0000-0003-2949-1758, Engelhardt, Alexander, Schulz, Daniel, Schmid, Matthias ORCID: 0000-0002-0788-0317, Tresch, Achim and Gagneur, Julien ORCID: 0000-0002-8924-8365 (2017). GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis. Bioinformatics, 33 (15). S. 2258 - 2266. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2059

Werner, David John, Baar, Till ORCID: 0000-0002-6744-1463, Kiesslich, Ralf, Wenzel, Nicolai, Abusalim, Nael, Tresch, Achim ORCID: 0000-0002-4146-6371 and Rey, Johannes Wilhelm (2021). Endoscopic hemostasis makes the difference: Angiographic treatment in patients with lower gastrointestinal bleeding. World J. Gastrointest. Endosc., 13 (7). S. 221 - 233. PLEASANTON: BAISHIDENG PUBLISHING GROUP INC. ISSN 1948-5190

Werner, David John, Wenzel, Nicolai, Abusalim, Nael, Kiesslich, Ralf, Baar, Till ORCID: 0000-0002-6744-1463, Tresch, Achim and Rey, Johannes Wilhelm (2022). Unmasking lower gastrointestinal bleeding under administration of norepinephrine. World J. Radiol., 14 (12). S. 375 - 384. PLEASANTON: BAISHIDENG PUBLISHING GROUP INC. ISSN 1949-8470

Zacher, Benedikt, Lidschreiber, Michael, Cramer, Patrick, Gagneur, Julien ORCID: 0000-0002-8924-8365 and Tresch, Achim (2014). Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. Mol. Syst. Biol., 10 (12). HOBOKEN: WILEY-BLACKWELL. ISSN 1744-4292

Zacher, Benedikt, Michel, Margaux, Schwalb, Bjoern, Cramer, Patrick, Tresch, Achim and Gagneur, Julien ORCID: 0000-0002-8924-8365 (2017). Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN. PLoS One, 12 (1). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

da Costa, Olivia Prazeres, Hoffman, Arthur, Rey, Johannes W., Mansmann, Ulrich, Buch, Thorsten ORCID: 0000-0002-2236-9074 and Tresch, Achim (2014). Selection of Higher Order Regression Models in the Analysis of Multi-Factorial Transcription Data. PLoS One, 9 (3). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

This list was generated on Fri Mar 29 06:47:06 2024 CET.