Feng, Helian, Gusev, Alexander, Pasaniuc, Bogdan, Wu, Lang, Long, Jirong, Abu-full, Zomoroda, Aittomaki, Kristiina, Andrulis, Irene L., Anton-Culver, Hoda, Antoniou, Antonis C., Arason, Adalgeir, Arndt, Volker, Aronson, Kristan J., Arun, Banu K., Asseryanis, Ella, Auer, Paul L., Azzollini, Jacopo, Balmana, Judith, Barkardottir, Rosa B., Barnes, Daniel R., Barrowdale, Daniel ORCID: 0000-0003-1661-3939, Beckmann, Matthias W., Behrens, Sabine, Benitez, Javier, Bermisheva, Marina, Bialkowska, Katarzyna ORCID: 0000-0001-8489-6665, Blanco, Ana, Blomqvist, Carl, Boeckx, Bram, Bogdanova, Natalia V., Bojesen, Stig E., Bolla, Manjeet K., Bonanni, Bernardo, Borg, Ake, Brauch, Hiltrud ORCID: 0000-0001-7531-2736, Brenner, Hermann ORCID: 0000-0002-6129-1572, Briceno, Ignacio, Broeks, Annegien, Bruening, Thomas, Burwinkel, Barbara, Cai, Qiuyin, Caldes, Trinidad, Caligo, Maria A., Campbell, Ian, Canisius, Sander, Campa, Daniele, Carter, Brian D., Carter, Jonathan, Castelao, Jose E., Chang-Claude, Jenny, Chanock, Stephen J., Christiansen, Hans, Chung, Wendy K., Claes, Kathleen B. M., Clarke, Christine L., Couch, Fergus J., Cox, Angela ORCID: 0000-0002-5138-1099, Cross, Simon S., Cybulski, Cezary, Czene, Kamila, Daly, Mary B., de la Hoya, Miguel, De Leeneer, Kim, Dennis, Joe, Devilee, Peter, Diez, Orland, Domchek, Susan M., Doerk, Thilo, dos-Santos-Silva, Isabel, Dunning, Alison M., Dwek, Miriam ORCID: 0000-0001-7184-2932, Eccles, Diana M., Ejlertsen, Bent, Ellberg, Carolina, Engel, Christoph ORCID: 0000-0002-7247-282X, Eriksson, Mikael, Fasching, Peter A., Fletcher, Olivia, Flyger, Henrik, Fostira, Florentia, Friedman, Eitan, Fritschi, Lin ORCID: 0000-0002-7692-3560, Frost, Debra, Gabrielson, Marike, Ganz, Patricia A., Gapstur, Susan M., Garber, Judy, Garcia-Closas, Montserrat, Garcia-Saenz, Jose A., Gaudet, Mia M., Giles, Graham G., Glendon, Gord, Godwin, Andrew K., Goldberg, Mark S., Goldgar, David E., Gonzalez-Neira, Anna ORCID: 0000-0002-5421-2020, Greene, Mark H., Gronwald, Jacek, Guenel, Pascal ORCID: 0000-0002-8359-518X, Haiman, Christopher A., Hall, Per, Hamann, Ute, Hake, Christopher, He, Wei ORCID: 0000-0003-0161-3274, Heyworth, Jane ORCID: 0000-0003-1411-4554, Hogervorst, Frans B. L., Hollestelle, Antoinette, Hooning, Maartje J., Hoover, Robert N., Hopper, John L., Huang, Guanmengqian, Hulick, Peter J., Humphreys, Keith, Imyanitov, Evgeny N., Isaacs, Claudine, Jakimovska, Milena, Jakubowska, Anna, James, Paul ORCID: 0000-0002-4361-4657, Janavicius, Ramunas, Jankowitz, Rachel C., John, Esther M., Johnson, Nichola, Joseph, Vijai, Jung, Audrey, Karlan, Beth Y., Khusnutdinova, Elza, Kiiski, Johanna, I, Konstantopoulou, Irene ORCID: 0000-0002-0470-0309, Kristensen, Vessela N., Laitman, Yael, Lambrechts, Diether ORCID: 0000-0002-3429-302X, Lazaro, Conxi, Leroux, Dominique, Leslie, Goska, Lester, Jenny, Lesueur, Fabienne, Lindor, Noralane, Lindstrom, Sara, Lo, Wing-Yee, Loud, Jennifer T., Lubinski, Jan, Makalic, Enes, Mannermaa, Arto, Manoochehri, Mehdi, Manoukian, Siranoush, Margolin, Sara, Martens, John W. M., Martinez, Maria E., Matricardi, Laura, Maurer, Tabea, Mavroudis, Dimitrios, McGuffog, Lesley, Meindl, Alfons, Menon, Usha, Michailidou, Kyriaki ORCID: 0000-0001-7065-1237, Kapoor, Pooja M., Miller, Austin, Montagna, Marco, Moreno, Fernando, Moserle, Lidia, Mulligan, Anna M., Muranen, Taru A., Nathanson, Katherine L., Neuhausen, Susan L., Nevanlinna, Heli, Nevelsteen, Ines, Nielsen, Finn C., Nikitina-Zake, Liene, Offit, Kenneth, Olah, Edith, Olopade, Olufunmilayo, I, Olsson, Hakan ORCID: 0000-0002-8794-9635, Osorio, Ana ORCID: 0000-0001-8124-3984, Papp, Janos, Park-Simon, Tjoung-Won, Parsons, Michael T., Pedersen, Inge S., Peixoto, Ana ORCID: 0000-0002-1404-5897, Peterlongo, Paolo ORCID: 0000-0001-6951-6855, Peto, Julian, Pharoah, Paul D. P., Phillips, Kelly-Anne, Plaseska-Karanfilska, Dijana, Poppe, Bruce, Pradhan, Nisha, Prajzendanc, Karolina, Presneau, Nadege, Punie, Kevin ORCID: 0000-0002-1162-7963, Pylkas, Katri, Radice, Paolo, Rantala, Johanna, Rashid, Muhammad Usman, Rennert, Gad, Risch, Harvey A., Robson, Mark, Romero, Atocha, Saloustros, Emmanouil, Sandler, Dale P., Santos, Catarina ORCID: 0000-0002-9102-757X, Sawyer, Elinor J., Schmidt, Marjanka K., Schmidt, Daniel F., Schmutzler, Rita K., Schoemaker, Minouk J., Scott, Rodney J., Sharma, Priyanka, Shu, Xiao-Ou, Simard, Jacques, Singer, Christian F., Skytte, Anne-Bine ORCID: 0000-0002-0067-9557, Soucy, Penny, Southey, Melissa C., Spinelli, John J., Spurdle, Amanda B., Stone, Jennifer ORCID: 0000-0001-5077-0124, Swerdlow, Anthony J., Tapper, William J., Taylor, Jack A., Teixeira, Manuel R., Terry, Mary Beth, Teule, Alex, Thomassen, Mads, Thoene, Kathrin, Thull, Darcy L., Tischkowitz, Marc, Toland, Amanda E., Tollenaar, Rob A. E. M., Torres, Diana, Truong, Therese, Tung, Nadine, Vachon, Celine M., van Asperen, Christi J., van den Ouweland, Ans M. W., van Rensburg, Elizabeth J., Vega, Ana, Viel, Alessandra, Vieiro-Balo, Paula, Wang, Qin, Wappenschmidt, Barbara, Weinberg, Clarice R., Weitzel, Jeffrey N., Wendt, Camilla, Winqvist, Robert, Yang, Xiaohong R., Yannoukakos, Drakoulis, Ziogas, Argyrios, Milne, Roger L., Easton, Douglas F., Chenevix-Trench, Georgia ORCID: 0000-0002-1878-2587, Zheng, Wei, Kraft, Peter and Jiang, Xia
(2020).
Transcriptome-wide association study of breast cancer risk by estrogen-receptor status.
Genet. Epidemiol., 44 (5).
S. 442 - 469.
HOBOKEN:
WILEY.
ISSN 1098-2272
Full text not available from this repository.
Abstract
Previous transcriptome-wide association studies (TWAS) have identified breast cancer risk genes by integrating data from expression quantitative loci and genome-wide association studies (GWAS), but analyses of breast cancer subtype-specific associations have been limited. In this study, we conducted a TWAS using gene expression data from GTEx and summary statistics from the hitherto largest GWAS meta-analysis conducted for breast cancer overall, and by estrogen receptor subtypes (ER+ and ER-). We further compared associations with ER+ and ER- subtypes, using a case-only TWAS approach. We also conducted multigene conditional analyses in regions with multiple TWAS associations. Two genes, STXBP4 and HIST2H2BA, were specifically associated with ER+ but not with ER- breast cancer. We further identified 30 TWAS-significant genes associated with overall breast cancer risk, including four that were not identified in previous studies. Conditional analyses identified single independent breast-cancer gene in three of six regions harboring multiple TWAS-significant genes. Our study provides new information on breast cancer genetics and biology, particularly about genomic differences between ER+ and ER- breast cancer.
Item Type: |
Journal Article
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Creators: |
Creators | Email | ORCID | ORCID Put Code |
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Feng, Helian | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Gusev, Alexander | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Pasaniuc, Bogdan | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Wu, Lang | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Long, Jirong | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Abu-full, Zomoroda | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Aittomaki, Kristiina | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Andrulis, Irene L. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Anton-Culver, Hoda | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Antoniou, Antonis C. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Arason, Adalgeir | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Arndt, Volker | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Aronson, Kristan J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Arun, Banu K. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Asseryanis, Ella | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Auer, Paul L. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Azzollini, Jacopo | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Balmana, Judith | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Barkardottir, Rosa B. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Barnes, Daniel R. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Barrowdale, Daniel | UNSPECIFIED | orcid.org/0000-0003-1661-3939 | UNSPECIFIED | Beckmann, Matthias W. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Behrens, Sabine | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Benitez, Javier | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bermisheva, Marina | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bialkowska, Katarzyna | UNSPECIFIED | orcid.org/0000-0001-8489-6665 | UNSPECIFIED | Blanco, Ana | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Blomqvist, Carl | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Boeckx, Bram | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bogdanova, Natalia V. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bojesen, Stig E. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bolla, Manjeet K. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bonanni, Bernardo | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Borg, Ake | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Brauch, Hiltrud | UNSPECIFIED | orcid.org/0000-0001-7531-2736 | UNSPECIFIED | Brenner, Hermann | UNSPECIFIED | orcid.org/0000-0002-6129-1572 | UNSPECIFIED | Briceno, Ignacio | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Broeks, Annegien | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Bruening, Thomas | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Burwinkel, Barbara | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Cai, Qiuyin | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Caldes, Trinidad | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Caligo, Maria A. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Campbell, Ian | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Canisius, Sander | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Campa, Daniele | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Carter, Brian D. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Carter, Jonathan | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Castelao, Jose E. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Chang-Claude, Jenny | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Chanock, Stephen J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Christiansen, Hans | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Chung, Wendy K. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Claes, Kathleen B. 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P. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Phillips, Kelly-Anne | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Plaseska-Karanfilska, Dijana | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Poppe, Bruce | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Pradhan, Nisha | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Prajzendanc, Karolina | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Presneau, Nadege | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Punie, Kevin | UNSPECIFIED | orcid.org/0000-0002-1162-7963 | UNSPECIFIED | Pylkas, Katri | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Radice, Paolo | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Rantala, Johanna | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Rashid, Muhammad Usman | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Rennert, Gad | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Risch, Harvey A. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Robson, Mark | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Romero, Atocha | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Saloustros, Emmanouil | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Sandler, Dale P. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Santos, Catarina | UNSPECIFIED | orcid.org/0000-0002-9102-757X | UNSPECIFIED | Sawyer, Elinor J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Schmidt, Marjanka K. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Schmidt, Daniel F. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Schmutzler, Rita K. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Schoemaker, Minouk J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Scott, Rodney J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Sharma, Priyanka | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Shu, Xiao-Ou | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Simard, Jacques | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Singer, Christian F. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Skytte, Anne-Bine | UNSPECIFIED | orcid.org/0000-0002-0067-9557 | UNSPECIFIED | Soucy, Penny | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Southey, Melissa C. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Spinelli, John J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Spurdle, Amanda B. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Stone, Jennifer | UNSPECIFIED | orcid.org/0000-0001-5077-0124 | UNSPECIFIED | Swerdlow, Anthony J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Tapper, William J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Taylor, Jack A. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Teixeira, Manuel R. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Terry, Mary Beth | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Teule, Alex | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Thomassen, Mads | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Thoene, Kathrin | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Thull, Darcy L. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Tischkowitz, Marc | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Toland, Amanda E. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Tollenaar, Rob A. 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W. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | van Rensburg, Elizabeth J. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Vega, Ana | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Viel, Alessandra | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Vieiro-Balo, Paula | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Wang, Qin | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Wappenschmidt, Barbara | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Weinberg, Clarice R. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Weitzel, Jeffrey N. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Wendt, Camilla | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Winqvist, Robert | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Yang, Xiaohong R. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Yannoukakos, Drakoulis | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Ziogas, Argyrios | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Milne, Roger L. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Easton, Douglas F. | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Chenevix-Trench, Georgia | UNSPECIFIED | orcid.org/0000-0002-1878-2587 | UNSPECIFIED | Zheng, Wei | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Kraft, Peter | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED | Jiang, Xia | UNSPECIFIED | UNSPECIFIED | UNSPECIFIED |
|
URN: |
urn:nbn:de:hbz:38-343442 |
DOI: |
10.1002/gepi.22288 |
Journal or Publication Title: |
Genet. Epidemiol. |
Volume: |
44 |
Number: |
5 |
Page Range: |
S. 442 - 469 |
Date: |
2020 |
Publisher: |
WILEY |
Place of Publication: |
HOBOKEN |
ISSN: |
1098-2272 |
Language: |
English |
Faculty: |
Unspecified |
Divisions: |
Unspecified |
Subjects: |
no entry |
Uncontrolled Keywords: |
Keywords | Language |
---|
SUSCEPTIBILITY LOCI; CARRIERS; TISSUE; IDENTIFICATION; STATISTICS; EXPRESSION; VARIANTS | Multiple languages | Genetics & Heredity; Mathematical & Computational Biology | Multiple languages |
|
URI: |
http://kups.ub.uni-koeln.de/id/eprint/34344 |
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