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Journal Article
Brant, Lilija, Georgomanolis, Theodore, Nikolic, Milos ORCID: 0000-0003-0029-7601, Brackley, Chris A., Kolovos, Petros
ORCID: 0000-0002-0787-6158, van Ijcken, Wilfred, Grosveld, Frank G., Marenduzzo, Davide
ORCID: 0000-0003-3974-4915 and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2016).
Exploiting native forces to capture chromosome conformation in mammalian cell nuclei.
Mol. Syst. Biol., 12 (12).
HOBOKEN:
WILEY.
ISSN 1744-4292
Cruz-Molina, Sara, Respuela, Patricia ORCID: 0000-0002-9719-7860, Tebartz, Christina, Kolovos, Petros
ORCID: 0000-0002-0787-6158, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Fueyo, Raquel, van Ijcken, Wilfred F. J., Grosveld, Frank, Frommolt, Peter
ORCID: 0000-0002-1966-8014, Bazzi, Hisham
ORCID: 0000-0001-8388-4005 and Rada-Iglesias, Alvaro
(2017).
PRC2 Facilitates the Regulatory Topology Required for Poised Enhancer Function during Pluripotent Stem Cell Differentiation.
Cell Stem Cell, 20 (5).
S. 689 - 715.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Franzen, Julia ORCID: 0000-0002-2459-5841, Georgomanolis, Theodoros, Selich, Anton, Kuo, Chao-Chung
ORCID: 0000-0001-8879-4754, Stoeger, Reinhard, Brant, Lilija, Mulabdic, Melita Sara, Fernandez-Rebollo, Eduardo, Grezella, Clara, Ostrowska, Alina, Begemann, Matthias, Nikolic, Milos, Rath, Bjoern, Ho, Anthony D., Rothe, Michael, Schambach, Axel, Papantonis, Argyris and Wagner, Wolfgang
(2021).
DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift.
Commun. Biol., 4 (1).
BERLIN:
NATURE RESEARCH.
ISSN 2399-3642
Gabriel, Elke, Ramani, Anand, Karow, Ulrike, Gottardo, Marco ORCID: 0000-0001-8649-7799, Natarajan, Karthick, Gooi, Li Ming, Goranci-Buzhala, Gladiola, Krut, Oleg, Peters, Franziska, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Kuivanen, Suvi, Korhonen, Essi
ORCID: 0000-0003-4730-7715, Smura, Teemu
ORCID: 0000-0002-9187-3151, Vapalahti, Olli
ORCID: 0000-0003-2270-6824, Papantonis, Argyris
ORCID: 0000-0001-7551-1073, Schmidt-Chanasit, Jonas, Riparbelli, Maria, Callaini, Giuliano
ORCID: 0000-0003-2252-0309, Kroenke, Martin, Utermoehlen, Olaf and Gopalakrishnan, Jay
(2017).
Recent Zika Virus Isolates Induce Premature Differentiation of Neural Progenitors in Human Brain Organoids.
Cell Stem Cell, 20 (3).
S. 397 - 412.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Izquierdo, Elena, Vorholt, Daniela, Blakemore, Stuart, Sackey, Benedict ORCID: 0000-0003-1016-7720, Nolte, Janica L., Barbarino, Verena, Schmitz, Jan, Nickel, Nadine, Bachurski, Daniel
ORCID: 0000-0001-9168-9680, Lobastova, Liudmila, Nikolic, Milos, Michalik, Michael, Brinker, Reinhild, Merkel, Olaf, Franitza, Marek, Georgomanolis, Theodoros, Neuhaus, Rene, Koch, Maximilian, Nasada, Niklas, Knittel, Gero, Chapuy, Bjoern
ORCID: 0000-0002-6485-8773, Ludwig, Nicole, Meese, Eckart, Frenzel, Lukas, Reinhardt, Hans Christian, Peifer, Martin
ORCID: 0000-0002-5243-5503, Rebollido-Rios, Rocio, Bruns, Heiko, Krueger, Marcus, Hallek, Michael and Pallasch, Christian P.
(2022).
Extracellular vesicles and PD-L1 suppress macrophages, inducing therapy resistance in TP53-deficient B-cell malignancies.
Blood, 139 (25).
S. 3617 - 3630.
WASHINGTON:
AMER SOC HEMATOLOGY.
ISSN 1528-0020
Kolovos, Petros ORCID: 0000-0002-0787-6158, Georgomanolis, Theodore, Koeferle, Anna, Larkin, Joshua D., Brant, Lilija, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Gusmao, Eduardo G., Zirkel, Anne, Knoch, Tobias A., van Ijcken, Wilfred F., Cook, Peter R., Costa, Ivan G.
ORCID: 0000-0003-2890-8697, Grosveld, Frank G. and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2016).
Binding of nuclear factor kappa B to noncanonical consensus sites reveals its multimodal role during the early inflammatory response.
Genome Res., 26 (11).
S. 1478 - 1490.
COLD SPRING HARBOR:
COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT.
ISSN 1549-5469
Laugsch, Magdalena, Bartusel, Michaela, Rehimi, Rizwan, Alirzayeva, Hafiza, Karaolidou, Agathi, Crispatzu, Giuliano, Zentis, Peter, Nikolic, Milos ORCID: 0000-0003-0029-7601, Bleckwehl, Tore, Kolovos, Petros
ORCID: 0000-0002-0787-6158, van Ijcken, Wilfred F. J., Saric, Tomo, Koehler, Katrin, Frommolt, Peter
ORCID: 0000-0002-1966-8014, Lachlan, Katherine, Baptista, Julia and Rada-Iglesias, Alvaro
(2019).
Modeling the Pathological Long-Range Regulatory Effects of Human Structural Variation with Patient-Specific hiPSCs.
Cell Stem Cell, 24 (5).
S. 736 - 765.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Ludwig, Kerstin U., Boehmer, Anne C., Bowes, John, Nikolic, Milos ORCID: 0000-0003-0029-7601, Ishorst, Nina, Wyatt, Niki, Hammond, Nigel L., Goelz, Lina, Thieme, Frederic, Barth, Sandra, Schuenke, Hannah, Klamt, Johanna, Spielmann, Malte
ORCID: 0000-0002-0583-4683, Aldhorae, Khalid
ORCID: 0000-0002-5920-8004, Rojas-Martinez, Augusto, Noethen, Markus M., Rada-Iglesias, Alvaro, Dixon, Michael J., Knapp, Michael and Mangold, Elisabeth
(2017).
Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip 6 cleft palate and cleft palate only.
Hum. Mol. Genet., 26 (4).
S. 829 - 843.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1460-2083
Nikolic, Milos ORCID: 0000-0003-0029-7601, Papantonis, Argyris
ORCID: 0000-0001-7551-1073 and Rada-Iglesias, Alvaro
ORCID: 0000-0001-7137-1341
(2017).
GARLIC: a bioinformatic toolkit for aetiologically connecting diseases and cell type-specific regulatory maps.
Hum. Mol. Genet., 26 (4).
S. 742 - 753.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1460-2083
Rehimi, Rizwan, Nikolic, Milos ORCID: 0000-0003-0029-7601, Cruz-Molina, Sara, Tebartz, Christina, Frommolt, Peter
ORCID: 0000-0002-1966-8014, Mahabir, Esther, Clement-Ziza, Mathieu
ORCID: 0000-0003-2763-249X and Rada-Iglesias, Alvaro
ORCID: 0000-0001-7137-1341
(2016).
Epigenomics-Based Identification of Major Cell Identity Regulators within Heterogeneous Cell Populations.
Cell Reports, 17 (11).
S. 3062 - 3077.
CAMBRIDGE:
CELL PRESS.
ISSN 2211-1247
Respuela, Patricia ORCID: 0000-0002-9719-7860, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Tan, Minjia
ORCID: 0000-0002-6784-9653, Frommolt, Peter
ORCID: 0000-0002-1966-8014, Zhao, Yingming, Wysocka, Joanna and Rada-Iglesias, Alvaro
ORCID: 0000-0001-7137-1341
(2016).
Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification.
Cell Stem Cell, 18 (1).
S. 118 - 134.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Sofiadis, Konstantinos, Josipovic, Natasa ORCID: 0000-0001-7683-0869, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Kargapolova, Yulia
ORCID: 0000-0001-7541-5778, Ubelmesser, Nadine, Varamogianni-Mamatsi, Vassiliki, Zirkel, Anne, Papadionysiou, Ioanna, Loughran, Gary, Keane, James
ORCID: 0000-0001-7640-8326, Michel, Audrey, Gusmao, Eduardo G., Becker, Christian, Altmueller, Janine, Georgomanolis, Theodore, Mizi, Athanasia and Papantonis, Argyris
(2021).
HMGB1 coordinates SASP-related chromatin folding and RNA homeostasis on the path to senescence.
Mol. Syst. Biol., 17 (6).
HOBOKEN:
WILEY.
ISSN 1744-4292
Wagle, Prerana, Nikolic, Milos ORCID: 0000-0003-0029-7601 and Frommolt, Peter
ORCID: 0000-0002-1966-8014
(2015).
QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation.
BMC Genomics, 16.
LONDON:
BIOMED CENTRAL LTD.
ISSN 1471-2164
Zirkel, Anne, Nikolic, Milos ORCID: 0000-0003-0029-7601, Sofiadis, Konstantinos, Mallm, Jan-Philipp, Brackley, Chris A., Gothe, Henrike, Drechsel, Oliver, Becker, Christian, Altmueller, Janine, Josipovic, Natasa, Georgomanolis, Theodore, Brant, Lilija, Franzen, Julia, Koker, Mirjam, Gusmao, Eduardo G., Costa, Ivan G.
ORCID: 0000-0003-2890-8697, Ullrich, Roland T., Wagner, Wolfgang
ORCID: 0000-0002-1971-3217, Roukos, Vassilis
ORCID: 0000-0002-5065-3937, Nuernberg, Peter, Marenduzzo, Davide
ORCID: 0000-0003-3974-4915, Rippe, Karsten
ORCID: 0000-0001-9951-9395 and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2018).
HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types.
Mol. Cell, 70 (4).
S. 730 - 751.
CAMBRIDGE:
CELL PRESS.
ISSN 1097-4164