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Morris, Dylan H., Gostic, Katelyn M., Pompei, Simone, Bedford, Trevor, Luksza, Marta, Neher, Richard A., Grenfell, Bryan T., Laessig, Michael and McCauley, John W. (2018). Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology. Trends Microbiol., 26 (2). S. 102 - 119. OXFORD: ELSEVIER SCI LTD. ISSN 1878-4380
Pompei, Simone, Loreto, Vittorio and Tria, Francesca (2018). Copystree Gaming artificial phylogenies. Lang. Dyn. Chang., 8 (1). S. 55 - 78. LEIDEN: BRILL ACADEMIC PUBLISHERS. ISSN 2210-5832
Power, Jeffrey J., Pinheiro, Fernanda 
ORCID: 0000-0002-0132-0562, Pompei, Simone, Kovacova, Viera ORCID: 0000-0003-4581-4254, Yueksel, Melih, Rathmann, Isabel ORCID: 0000-0003-0596-9630, Foerster, Mona, Laessig, Michael and Maier, Berenike ORCID: 0000-0001-6971-9927
(2021).
Adaptive evolution of hybrid bacteria by horizontal gene transfer.
Proc. Natl. Acad. Sci. U. S. A., 118 (10).
WASHINGTON:
NATL ACAD SCIENCES.
ISSN 0027-8424
Pugliese, Martina, Loreto, Vittorio, Pompei, Simone and Tria, Francesca (2016). Exploring the evolution of pathogens organised in discrete antigenic clusters. J. Stat. Mech.-Theory Exp.. BRISTOL: IOP PUBLISHING LTD. ISSN 1742-5468