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Journal Article
Weiterer, Sinah-Sophia, Meier-Soelch, Johanna, Georgomanolis, Theodore, Mizi, Athanasia ORCID: 0000-0002-4313-491X, Beyerlein, Anna, Weiser, Hendrik, Brant, Lilija, Mayr-Buro, Christin, Jurida, Liane, Beuerlein, Knut, Mueller, Helmut, Weber, Axel, Tenekeci, Ulas, Dittrich-Breiholz, Oliver, Bartkuhn, Marek, Nist, Andrea, Stiewe, Thorsten
ORCID: 0000-0003-0134-7826, van IJcken, Wilfred F. J., Riedlinger, Tabea, Schmitz, M. Lienhard
ORCID: 0000-0002-6984-7192, Papantonis, Argyris
ORCID: 0000-0001-7551-1073 and Kracht, Michael
(2020).
Distinct IL-1 alpha-responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner.
Embo J., 39 (1).
HOBOKEN:
WILEY.
ISSN 1460-2075
Mizi, Athanasia ORCID: 0000-0002-4313-491X, Gusmao, Eduardo Gade and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2020).
iHi-C 2.0: A simple approach for mapping native spatial chromatin organisation from low cell numbers.
Methods, 170.
S. 33 - 38.
SAN DIEGO:
ACADEMIC PRESS INC ELSEVIER SCIENCE.
ISSN 1095-9130
Ahuja, Gaurav ORCID: 0000-0002-2837-9361, Bartsch, Deniz, Yao, Wenjie, Geissen, Simon, Frank, Stefan, Aguirre, Aitor
ORCID: 0000-0002-1383-2792, Russ, Nicole, Messling, Jan-Erik
ORCID: 0000-0003-3843-0041, Dodzian, Joanna, Lagerborg, Kim A., Vargas, Natalia Emilse, Muck, Joscha Sergej, Brodesser, Susanne, Baldus, Stephan, Sachinidis, Agapios, Hescheler, Juergen, Dieterich, Christoph, Trifunovic, Aleksandra, Papantonis, Argyris
ORCID: 0000-0001-7551-1073, Petrascheck, Michael, Klinke, Anna, Jain, Mohit, Valenzano, Dario Riccardo and Kurian, Leo
ORCID: 0000-0001-7466-5169
(2019).
Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart.
EMBO Rep., 20 (4).
HOBOKEN:
WILEY.
ISSN 1469-3178
Gothe, Henrike Johanna, Bouwman, Britta Annika Maria, Gusmao, Eduardo Gade, Piccinno, Rossana, Petrosino, Giuseppe ORCID: 0000-0002-2835-4308, Sayols, Sergi
ORCID: 0000-0002-3877-4170, Drechsel, Oliver, Minneker, Vera, Josipovic, Natasa, Mizi, Athanasia
ORCID: 0000-0002-4313-491X, Nielsen, Christian Friberg
ORCID: 0000-0002-2886-317X, Wagner, Eva-Maria, Takeda, Shunichi, Sasanuma, Hiroyuki, Hudson, Damien Francis, Kindler, Thomas, Baranello, Laura, Papantonis, Argyris
ORCID: 0000-0001-7551-1073, Crosetto, Nicola and Roukos, Vassilis
ORCID: 0000-0002-5065-3937
(2019).
Spatial Chromosome Folding and Active Transcription Drive DNA Fragility and Formation of Oncogenic MLL Translocations.
Mol. Cell, 75 (2).
S. 267 - 296.
CAMBRIDGE:
CELL PRESS.
ISSN 1097-4164
Ubelmesser, Nadine and Papantonis, Argyris ORCID: 0000-0001-7551-1073
(2019).
Technologies to study spatial genome organization: beyond 3C.
Brief. Funct. Genomics, 18 (6).
S. 395 - 402.
OXFORD:
OXFORD UNIV PRESS.
ISSN 2041-2657
Frank, Stefan, Ahuja, Gaurav ORCID: 0000-0002-2837-9361, Bartsch, Deniz, Russ, Nicole, Yao, Wenjie, Kuo, Joseph Chao-Chung, Derks, Jens-Peter, Akhade, Vijay Suresh, Kargapolova, Yulia, Georgomanolis, Theodore, Messling, Jan-Erik
ORCID: 0000-0003-3843-0041, Gramm, Marie, Brant, Lilija, Rehimi, Rizwan, Vargas, Natalia Emilse, Kuroczik, Alina, Yang, Tsun-Po, Sahito, Raja Ghazanfar Ali, Franzen, Julia, Hescheler, Juergen, Sachinidis, Agapios, Peifer, Martin, Rada-Iglesias, Alvaro
ORCID: 0000-0001-7137-1341, Kanduri, Meena, Costa, Ivan G.
ORCID: 0000-0003-2890-8697, Kanduri, Chandrasekhar, Papantonis, Argyris
ORCID: 0000-0001-7551-1073 and Kurian, Leo
ORCID: 0000-0001-7466-5169
(2019).
yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs.
Cell Stem Cell, 24 (2).
S. 318 - 336.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341, Grosveld, Frank G. and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2018).
Forces driving the three-dimensional folding of eukaryotic genomes.
Mol. Syst. Biol., 14 (6).
HOBOKEN:
WILEY.
ISSN 1744-4292
Zirkel, Anne, Nikolic, Milos ORCID: 0000-0003-0029-7601, Sofiadis, Konstantinos, Mallm, Jan-Philipp, Brackley, Chris A., Gothe, Henrike, Drechsel, Oliver, Becker, Christian, Altmueller, Janine, Josipovic, Natasa, Georgomanolis, Theodore, Brant, Lilija, Franzen, Julia, Koker, Mirjam, Gusmao, Eduardo G., Costa, Ivan G.
ORCID: 0000-0003-2890-8697, Ullrich, Roland T., Wagner, Wolfgang
ORCID: 0000-0002-1971-3217, Roukos, Vassilis
ORCID: 0000-0002-5065-3937, Nuernberg, Peter, Marenduzzo, Davide
ORCID: 0000-0003-3974-4915, Rippe, Karsten
ORCID: 0000-0001-9951-9395 and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2018).
HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types.
Mol. Cell, 70 (4).
S. 730 - 751.
CAMBRIDGE:
CELL PRESS.
ISSN 1097-4164
Michieletto, Davide, Chiang, Michael, Coli, Davide, Papantonis, Argyris ORCID: 0000-0001-7551-1073, Orlandini, Enzo, Cook, Peter R. and Marenduzzo, Davide
ORCID: 0000-0003-3974-4915
(2018).
Shaping epigenetic memory via genomic bookmarking.
Nucleic Acids Res., 46 (1).
S. 83 - 94.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1362-4962
Nikolic, Milos ORCID: 0000-0003-0029-7601, Papantonis, Argyris
ORCID: 0000-0001-7551-1073 and Rada-Iglesias, Alvaro
ORCID: 0000-0001-7137-1341
(2017).
GARLIC: a bioinformatic toolkit for aetiologically connecting diseases and cell type-specific regulatory maps.
Hum. Mol. Genet., 26 (4).
S. 742 - 753.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1460-2083
Gabriel, Elke, Ramani, Anand, Karow, Ulrike, Gottardo, Marco ORCID: 0000-0001-8649-7799, Natarajan, Karthick, Gooi, Li Ming, Goranci-Buzhala, Gladiola, Krut, Oleg, Peters, Franziska, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Kuivanen, Suvi, Korhonen, Essi
ORCID: 0000-0003-4730-7715, Smura, Teemu
ORCID: 0000-0002-9187-3151, Vapalahti, Olli
ORCID: 0000-0003-2270-6824, Papantonis, Argyris
ORCID: 0000-0001-7551-1073, Schmidt-Chanasit, Jonas, Riparbelli, Maria, Callaini, Giuliano
ORCID: 0000-0003-2252-0309, Kroenke, Martin, Utermoehlen, Olaf and Gopalakrishnan, Jay
(2017).
Recent Zika Virus Isolates Induce Premature Differentiation of Neural Progenitors in Human Brain Organoids.
Cell Stem Cell, 20 (3).
S. 397 - 412.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Franzen, Julia, Zirkel, Anne, Blake, Jonathon, Rath, Bjoern, Benes, Vladimir, Papantonis, Argyris ORCID: 0000-0001-7551-1073 and Wagner, Wolfgang
ORCID: 0000-0002-1971-3217
(2017).
Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells.
Aging Cell, 16 (1).
S. 183 - 192.
HOBOKEN:
WILEY.
ISSN 1474-9726
Kolovos, Petros ORCID: 0000-0002-0787-6158, Georgomanolis, Theodore, Koeferle, Anna, Larkin, Joshua D., Brant, Lilija, Nikolic, Milos
ORCID: 0000-0003-0029-7601, Gusmao, Eduardo G., Zirkel, Anne, Knoch, Tobias A., van Ijcken, Wilfred F., Cook, Peter R., Costa, Ivan G.
ORCID: 0000-0003-2890-8697, Grosveld, Frank G. and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2016).
Binding of nuclear factor kappa B to noncanonical consensus sites reveals its multimodal role during the early inflammatory response.
Genome Res., 26 (11).
S. 1478 - 1490.
COLD SPRING HARBOR:
COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT.
ISSN 1549-5469
Georgomanolis, Theodore, Sofiadis, Konstantinos and Papantonis, Argyris ORCID: 0000-0001-7551-1073
(2016).
Cutting a Long Intron Short : Recursive Splicing and Its Implications.
Front. Physiol., 7.
LAUSANNE:
FRONTIERS MEDIA SA.
ISSN 1664-042X
Brant, Lilija, Georgomanolis, Theodore, Nikolic, Milos ORCID: 0000-0003-0029-7601, Brackley, Chris A., Kolovos, Petros
ORCID: 0000-0002-0787-6158, van Ijcken, Wilfred, Grosveld, Frank G., Marenduzzo, Davide
ORCID: 0000-0003-3974-4915 and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2016).
Exploiting native forces to capture chromosome conformation in mammalian cell nuclei.
Mol. Syst. Biol., 12 (12).
HOBOKEN:
WILEY.
ISSN 1744-4292
Melnik, Svitlana, Caudron-Herger, Maiwen ORCID: 0000-0002-7030-8153, Brant, Lilija, Carr, Ian M., Rippe, Karsten
ORCID: 0000-0001-9951-9395, Cook, Peter R. and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2016).
Isolation of the protein and RNA content of active sites of transcription from mammalian cells.
Nat. Protoc., 11 (3).
S. 553 - 566.
LONDON:
NATURE PUBLISHING GROUP.
ISSN 1750-2799
Caudron-Herger, Maiwen ORCID: 0000-0002-7030-8153, Cook, Peter R., Rippe, Karsten
ORCID: 0000-0001-9951-9395 and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2015).
Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories.
Nucleic Acids Res., 43 (14).
OXFORD:
OXFORD UNIV PRESS.
ISSN 1362-4962
Kelly, Steven ORCID: 0000-0001-8583-5362, Greenman, Chris, Cook, Peter R. and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2015).
Exon Skipping Is Correlated with Exon Circularization.
J. Mol. Biol., 427 (15).
S. 2414 - 2418.
LONDON:
ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD.
ISSN 1089-8638
Diermeier, Sarah ORCID: 0000-0002-6120-2744, Kolovos, Petros
ORCID: 0000-0002-0787-6158, Heizinger, Leonhard
ORCID: 0000-0002-9766-7471, Schwartz, Uwe, Georgomanolis, Theodore, Zirkel, Anne, Wedemann, Gero
ORCID: 0000-0001-7869-774X, Grosveld, Frank, Knoch, Tobias A., Merkl, Rainer, Cook, Peter R., Laengst, Gernot and Papantonis, Argyris
ORCID: 0000-0001-7551-1073
(2014).
TNF alpha signalling primes chromatin for NF-kappa B binding and induces rapid and widespread nucleosome repositioning.
Genome Biol., 15 (12).
LONDON:
BMC.
ISSN 1474-760X
Zirkel, Anne and Papantonis, Argyris ORCID: 0000-0001-7551-1073
(2014).
Transcription as a force partitioning the eukaryotic genome.
Biol. Chem., 395 (11).
S. 1301 - 1306.
BERLIN:
WALTER DE GRUYTER GMBH.
ISSN 1437-4315
Brackley, Chris A., Taylor, Stephen, Papantonis, Argyris ORCID: 0000-0001-7551-1073, Cook, Peter R. and Marenduzzo, Davide
ORCID: 0000-0003-3974-4915
(2013).
Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.
Proc. Natl. Acad. Sci. U. S. A., 110 (38).
S. E3605 - 7.
WASHINGTON:
NATL ACAD SCIENCES.
ISSN 0027-8424
Papantonis, Argyris ORCID: 0000-0001-7551-1073 and Cook, Peter R.
(2013).
Transcription Factories: Genome Organization and Gene Regulation.
Chem. Rev., 113 (11).
S. 8683 - 8706.
WASHINGTON:
AMER CHEMICAL SOC.
ISSN 1520-6890
Book Section, Proceedings Item or annotation in a legal commentary
Papantonis, Argyris ORCID: 0000-0001-7551-1073, Swevers, Luc and Iatrou, Kostas
(2015).
Chorion Genes: A Landscape of Their Evolution, Structure, and Regulation.
In:
Annual Review of Entomology,
S. 177 - 195.
PALO ALTO:
ANNUAL REVIEWS.
ISBN 978-0-8243-0160-6