Universität zu Köln

Sofiadis, Konstantinos, Josipovic, Natasa ORCID: 0000-0001-7683-0869, Nikolic, Milos ORCID: 0000-0003-0029-7601, Kargapolova, Yulia ORCID: 0000-0001-7541-5778, Ubelmesser, Nadine, Varamogianni-Mamatsi, Vassiliki, Zirkel, Anne, Papadionysiou, Ioanna, Loughran, Gary, Keane, James ORCID: 0000-0001-7640-8326, Michel, Audrey, Gusmao, Eduardo G., Becker, Christian, Altmueller, Janine, Georgomanolis, Theodore, Mizi, Athanasia and Papantonis, Argyris (2021). HMGB1 coordinates SASP-related chromatin folding and RNA homeostasis on the path to senescence. Mol. Syst. Biol., 17 (6). HOBOKEN: WILEY. ISSN 1744-4292

Laugsch, Magdalena, Bartusel, Michaela, Rehimi, Rizwan, Alirzayeva, Hafiza, Karaolidou, Agathi, Crispatzu, Giuliano, Zentis, Peter, Nikolic, Milos ORCID: 0000-0003-0029-7601, Bleckwehl, Tore, Kolovos, Petros ORCID: 0000-0002-0787-6158, van Ijcken, Wilfred F. J., Saric, Tomo, Koehler, Katrin, Frommolt, Peter ORCID: 0000-0002-1966-8014, Lachlan, Katherine, Baptista, Julia and Rada-Iglesias, Alvaro (2019). Modeling the Pathological Long-Range Regulatory Effects of Human Structural Variation with Patient-Specific hiPSCs. Cell Stem Cell, 24 (5). S. 736 - 765. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Zirkel, Anne, Nikolic, Milos ORCID: 0000-0003-0029-7601, Sofiadis, Konstantinos, Mallm, Jan-Philipp, Brackley, Chris A., Gothe, Henrike, Drechsel, Oliver, Becker, Christian, Altmueller, Janine, Josipovic, Natasa, Georgomanolis, Theodore, Brant, Lilija, Franzen, Julia, Koker, Mirjam, Gusmao, Eduardo G., Costa, Ivan G. ORCID: 0000-0003-2890-8697, Ullrich, Roland T., Wagner, Wolfgang ORCID: 0000-0002-1971-3217, Roukos, Vassilis ORCID: 0000-0002-5065-3937, Nuernberg, Peter, Marenduzzo, Davide ORCID: 0000-0003-3974-4915, Rippe, Karsten ORCID: 0000-0001-9951-9395 and Papantonis, Argyris ORCID: 0000-0001-7551-1073 (2018). HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types. Mol. Cell, 70 (4). S. 730 - 751. CAMBRIDGE: CELL PRESS. ISSN 1097-4164

Nikolic, Milos ORCID: 0000-0003-0029-7601, Papantonis, Argyris ORCID: 0000-0001-7551-1073 and Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341 (2017). GARLIC: a bioinformatic toolkit for aetiologically connecting diseases and cell type-specific regulatory maps. Hum. Mol. Genet., 26 (4). S. 742 - 753. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2083

Ludwig, Kerstin U., Boehmer, Anne C., Bowes, John, Nikolic, Milos ORCID: 0000-0003-0029-7601, Ishorst, Nina, Wyatt, Niki, Hammond, Nigel L., Goelz, Lina, Thieme, Frederic, Barth, Sandra, Schuenke, Hannah, Klamt, Johanna, Spielmann, Malte ORCID: 0000-0002-0583-4683, Aldhorae, Khalid ORCID: 0000-0002-5920-8004, Rojas-Martinez, Augusto, Noethen, Markus M., Rada-Iglesias, Alvaro, Dixon, Michael J., Knapp, Michael and Mangold, Elisabeth (2017). Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip 6 cleft palate and cleft palate only. Hum. Mol. Genet., 26 (4). S. 829 - 843. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2083

Cruz-Molina, Sara, Respuela, Patricia ORCID: 0000-0002-9719-7860, Tebartz, Christina, Kolovos, Petros ORCID: 0000-0002-0787-6158, Nikolic, Milos ORCID: 0000-0003-0029-7601, Fueyo, Raquel, van Ijcken, Wilfred F. J., Grosveld, Frank, Frommolt, Peter ORCID: 0000-0002-1966-8014, Bazzi, Hisham ORCID: 0000-0001-8388-4005 and Rada-Iglesias, Alvaro (2017). PRC2 Facilitates the Regulatory Topology Required for Poised Enhancer Function during Pluripotent Stem Cell Differentiation. Cell Stem Cell, 20 (5). S. 689 - 715. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Gabriel, Elke, Ramani, Anand, Karow, Ulrike, Gottardo, Marco ORCID: 0000-0001-8649-7799, Natarajan, Karthick, Gooi, Li Ming, Goranci-Buzhala, Gladiola, Krut, Oleg, Peters, Franziska, Nikolic, Milos ORCID: 0000-0003-0029-7601, Kuivanen, Suvi, Korhonen, Essi ORCID: 0000-0003-4730-7715, Smura, Teemu ORCID: 0000-0002-9187-3151, Vapalahti, Olli ORCID: 0000-0003-2270-6824, Papantonis, Argyris ORCID: 0000-0001-7551-1073, Schmidt-Chanasit, Jonas, Riparbelli, Maria, Callaini, Giuliano ORCID: 0000-0003-2252-0309, Kroenke, Martin, Utermoehlen, Olaf and Gopalakrishnan, Jay (2017). Recent Zika Virus Isolates Induce Premature Differentiation of Neural Progenitors in Human Brain Organoids. Cell Stem Cell, 20 (3). S. 397 - 412. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Kolovos, Petros ORCID: 0000-0002-0787-6158, Georgomanolis, Theodore, Koeferle, Anna, Larkin, Joshua D., Brant, Lilija, Nikolic, Milos ORCID: 0000-0003-0029-7601, Gusmao, Eduardo G., Zirkel, Anne, Knoch, Tobias A., van Ijcken, Wilfred F., Cook, Peter R., Costa, Ivan G. ORCID: 0000-0003-2890-8697, Grosveld, Frank G. and Papantonis, Argyris ORCID: 0000-0001-7551-1073 (2016). Binding of nuclear factor kappa B to noncanonical consensus sites reveals its multimodal role during the early inflammatory response. Genome Res., 26 (11). S. 1478 - 1490. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT. ISSN 1549-5469

Rehimi, Rizwan, Nikolic, Milos ORCID: 0000-0003-0029-7601, Cruz-Molina, Sara, Tebartz, Christina, Frommolt, Peter ORCID: 0000-0002-1966-8014, Mahabir, Esther, Clement-Ziza, Mathieu ORCID: 0000-0003-2763-249X and Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341 (2016). Epigenomics-Based Identification of Major Cell Identity Regulators within Heterogeneous Cell Populations. Cell Reports, 17 (11). S. 3062 - 3077. CAMBRIDGE: CELL PRESS. ISSN 2211-1247

Brant, Lilija, Georgomanolis, Theodore, Nikolic, Milos ORCID: 0000-0003-0029-7601, Brackley, Chris A., Kolovos, Petros ORCID: 0000-0002-0787-6158, van Ijcken, Wilfred, Grosveld, Frank G., Marenduzzo, Davide ORCID: 0000-0003-3974-4915 and Papantonis, Argyris ORCID: 0000-0001-7551-1073 (2016). Exploiting native forces to capture chromosome conformation in mammalian cell nuclei. Mol. Syst. Biol., 12 (12). HOBOKEN: WILEY. ISSN 1744-4292

Respuela, Patricia ORCID: 0000-0002-9719-7860, Nikolic, Milos ORCID: 0000-0003-0029-7601, Tan, Minjia ORCID: 0000-0002-6784-9653, Frommolt, Peter ORCID: 0000-0002-1966-8014, Zhao, Yingming, Wysocka, Joanna and Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341 (2016). Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification. Cell Stem Cell, 18 (1). S. 118 - 134. CAMBRIDGE: CELL PRESS. ISSN 1875-9777

Wagle, Prerana, Nikolic, Milos ORCID: 0000-0003-0029-7601 and Frommolt, Peter ORCID: 0000-0002-1966-8014 (2015). QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation. BMC Genomics, 16. LONDON: BIOMED CENTRAL LTD. ISSN 1471-2164