Universität zu Köln

Journal Article

Rana, Shivani, Valentin, Klaus, Riehl, Jana, Blanfune, Aurelie, Reynes, Lauric, Thibaut, Thierry, Bartsch, Inka, Eichinger, Ludwig ORCID: 0000-0003-1594-6117 and Gloeckner, Gernot (2021). Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome. Genomics, 113 (2). S. 646 - 655. SAN DIEGO: ACADEMIC PRESS INC ELSEVIER SCIENCE. ISSN 1089-8646

Karow, Malte, Fischer, Sarah, Messling, Susanne, Konertz, Roman ORCID: 0000-0002-6488-1885, Riehl, Jana, Xiong, Qiuhong, Rijal, Ramesh ORCID: 0000-0003-0498-1064, Wagle, Prerana, Clemen, Christoph S. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2020). Functional Characterisation of the Autophagy ATG12 similar to 5/16 Complex in Dictyostelium discoideum. Cells, 9 (5). BASEL: MDPI. ISSN 2073-4409

Solga, Roxana, Behrens, Juliane, Ziemann, Anja, Riou, Adrien, Berwanger, Carolin, Becker, Lore ORCID: 0000-0002-6890-4984, Garrett, Lillian ORCID: 0000-0003-4880-7076, de Angelis, Martin Hrabe ORCID: 0000-0002-7898-2353, Fischer, Lisa, Coras, Roland, Barkovits, Katalin, Marcus, Katrin, Mahabir, Esther, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Schroeder, Rolf, Noegel, Angelika A., Clemen, Christoph S., Aguilar-Pimentel, Antonio, Schmidt-Weber, Carsten, Klopstock, Thomas, Adler, Thure, Treisel, Irina, Busch, Dirk H., Moreth, Kristin, Hoelter, Sabine M., Zimprich, Annemarie, Wurst, Wolfgang, Amarie, Oana, Graw, Jochen, Rozman, Jan, Calzada-Wack, Julia, Racz, Ildiko, Rathkolb, Birgit, Wolf, Eckhard, Oestereicher, Manuela, Miller, Gregor, Lengger, Christoph, Maier, Holger, Stoeger, Claudia, Leuchtenberger, Stefanie, Gallus-Durner, Valerie and Fuchs, Helmut (2019). CRN2 binds to TIMP4 and MMP14 and promotes perivascular invasion of glioblastoma cells. Eur. J. Cell Biol., 98 (5-8). MUNICH: ELSEVIER GMBH. ISSN 1618-1298

Fischer, Sarah ORCID: 0000-0001-6227-3950, Rijal, Ramesh, Frommolt, Peter ORCID: 0000-0002-1966-8014, Wagle, Prerana, Konertz, Roman, Faix, Jan, Wissling, Susanne and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2019). Functional Characterization of Ubiquitin-Like Core Autophagy Protein ATG12 in Dictyostelium discoideum. Cells, 8 (1). BASEL: MDPI. ISSN 2073-4409

Xiong, Qiuhong, Li, Wenjing, Li, Ping, Yang, Min, Wu, Changxin and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2019). The Role of ATG16 in Autophagy and The Ubiquitin Proteasome System. Cells, 8 (1). BASEL: MDPI. ISSN 2073-4409

Hofmann, Andreas ORCID: 0000-0003-4408-5467, Cross, Megan ORCID: 0000-0001-7512-7223, Karow, Malte A., Straub, Jan H., Clemen, Christoph S. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2019). A convenient tool for bivariate data analysis and bar graph plotting with R. Biochem. Mol. Biol. Educ., 47 (2). S. 207 - 211. HOBOKEN: WILEY. ISSN 1539-3429

Xiong, Qiuhong, Fischer, Sarah ORCID: 0000-0001-6227-3950, Karow, Malte, Mueller, Rolf, Messling, Susanne and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2018). ATG16 mediates the autophagic degradation of the 19S proteasomal subunits PSMD1 and PSMD2. Eur. J. Cell Biol., 97 (8). S. 523 - 533. MUNICH: ELSEVIER GMBH. ISSN 1618-1298

Swart, A. Leoni, Harrison, Christopher F., Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Steinert, Michael and Hilbi, Hubert ORCID: 0000-0002-5462-9301 (2018). Acanthamoeba and Dictyostelium as Cellular Models for Legionella Infection. Front. Cell. Infect. Microbiol., 8. LAUSANNE: FRONTIERS MEDIA SA. ISSN 2235-2988

Mross, Carmen, Marko, Marija, Munck, Martina, Gloeckner, Gernot, Motameny, Susanne, Altmueller, Janine, Noegel, Angelika A., Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Peche, Vivek S. and Neumann, Sascha (2018). Depletion of Nesprin-2 is associated with an embryonic lethal phenotype in mice. Nucleus, 9 (1). S. 503 - 516. PHILADELPHIA: TAYLOR & FRANCIS INC. ISSN 1949-1042

Song, Lin, Rijal, Ramesh ORCID: 0000-0003-0498-1064, Karow, Matte, Stumpf, Maria, Hahn, Oliver ORCID: 0000-0001-9015-4545, Park, Laura, Insall, Robert ORCID: 0000-0003-4898-040X, Schroeder, Rolf, Hofmann, Andreas ORCID: 0000-0003-4408-5467, Clemen, Christoph S. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2018). Expression of N471D strumpellin leads to defects in the endolysosomal system. Dis. Model. Mech., 11 (9). CAMBRIDGE: COMPANY BIOLOGISTS LTD. ISSN 1754-8411

Kustermann, Monika, Manta, Linda, Paone, Christoph, Kustermann, Jochen, Lausser, Ludwig, Wiesner, Cora, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Clemen, Christoph S., Schroeder, Rolf, Kestler, Hans A., Sandri, Marco, Rottbauer, Wolfgang and Just, Steffen (2018). Loss of the novel Vcp (valosin containing protein) interactor Washc4 interferes with autophagy-mediated proteostasis in striated muscle and leads to myopathy in vivo. Autophagy, 14 (11). S. 1911 - 1928. PHILADELPHIA: TAYLOR & FRANCIS INC. ISSN 1554-8635

Clemen, Christoph S., Winter, Lilli ORCID: 0000-0002-6368-1160, Strucksberg, Karl-Heinz, Berwanger, Carolin, Tuerk, Matthias, Kornblum, Cornelia, Florin, Alexandra, Aguilar-Pimentel, Juan Antonio, Amarie, Oana Veronica, Becker, Lore ORCID: 0000-0002-6890-4984, Garrett, Lillian ORCID: 0000-0003-4880-7076, Hans, Wolfgang, Moreth, Kristin, Neff, Frauke, Pingen, Laura, Rathkolb, Birgit, Racz, Ildika, Rozman, Jan ORCID: 0000-0002-8035-8904, Treise, Irina, Fuchs, Helmut, Gailus-Durner, Valerie, de Angelis, Martin Hrabe ORCID: 0000-0002-7898-2353, Vorgerd, Matthias, Eichinger, Ludwig ORCID: 0000-0003-1594-6117 and Schroeder, Rolf (2018). The heterozygous R155C VCP mutation: Toxic in humans! Harmless in mice? Biochem. Biophys. Res. Commun., 503 (4). S. 2770 - 2778. SAN DIEGO: ACADEMIC PRESS INC ELSEVIER SCIENCE. ISSN 1090-2104

Mueller, Rolf, Stumpf, Maria, Wehrstedt, Regina, Sukumaran, Salil K., Karow, Malte A., Marko, Marija, Noegel, Angelika A. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2018). The regulatory subunit phr2AB of Dictyostelium discoideum phosphatase PP2A interacts with the centrosomal protein CEP161, a CDK5RAP2 ortholog. Genes Cells, 23 (10). S. 923 - 932. HOBOKEN: WILEY. ISSN 1365-2443

Mesquita, Ana, Cardenal-Munoz, Elena ORCID: 0000-0003-4757-9323, Dominguez, Eunice, Munoz-Braceras, Sandra, Nunez-Corcuera, Beatriz, Phillips, Ben A., Tabara, Luis C., Xiong, Qiuhong, Coria, Roberto, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Golstein, Pierre ORCID: 0000-0003-1750-3483, King, Jason S., Soldati, Thierry, Vincent, Olivier and Escalante, Ricardo ORCID: 0000-0001-8547-531X (2017). Autophagy in Dictyostelium: Mechanisms, regulation and disease in a simple biomedical model. Autophagy, 13 (1). S. 24 - 41. PHILADELPHIA: TAYLOR & FRANCIS INC. ISSN 1554-8635

Li, Ping, Stumpf, Maria, Mueller, Rolf, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Gloeckner, Gernot and Noegel, Angelika A. (2017). The function of the inner nuclear envelope protein SUN1 in mRNA export is regulated by phosphorylation. Sci Rep, 7. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Stumpf, Maria, Mueller, Rolf, Gassen, Berthold, Wehrstedt, Regina, Fey, Petra ORCID: 0000-0002-4532-2703, Karow, Malte A., Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Gloeckner, Gernot and Noegel, Angelika A. (2017). A tripeptidyl peptidase 1 is a binding partner of the Golgi pH regulator (GPHR) in Dictyostelium. Dis. Model. Mech., 10 (7). S. 897 - 908. CAMBRIDGE: COMPANY BIOLOGISTS LTD. ISSN 1754-8411

Messling, Susanne, Matthias, Jan, Xiong, Qiuhong, Fischer, Sarah ORCID: 0000-0001-6227-3950 and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2017). The two Dictyostelium discoideum autophagy 8 proteins have distinct autophagic functions. Eur. J. Cell Biol., 96 (4). S. 312 - 325. JENA: ELSEVIER GMBH, URBAN & FISCHER VERLAG. ISSN 1618-1298

Burgute, Bhagyashri D., Peche, Vivek S., Mueller, Rolf, Matthias, Jan, Gassen, Berthold, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Gloeckner, Gernot and Noegel, Angelika A. (2016). The C-Terminal SynMuv/DdDUF926 Domain Regulates the Function of the N-Terminal Domain of DdNKAP. PLoS One, 11 (12). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Rijal, Ramesh ORCID: 0000-0003-0498-1064, Arhzaouy, Khalid, Strucksberg, Karl-Heinz, Cross, Megan ORCID: 0000-0001-7512-7223, Hofmann, Andreas ORCID: 0000-0003-4408-5467, Schroeder, Rolf, Clemen, Christoph S. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2016). Mutant p97 exhibits species-specific changes of its ATPase activity and compromises the UBXD9-mediated monomerisation of p97 hexamers. Eur. J. Cell Biol., 95 (6-7). S. 195 - 208. MUNICH: ELSEVIER GMBH. ISSN 1618-1298

Schilde, Christina, Lawal, Hajara M., Noegel, Angelika A., Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Schaap, Pauline ORCID: 0000-0003-4500-2555 and Gloeckner, Gernot (2016). A set of genes conserved in sequence and expression traces back the establishment of multicellularity in social amoebae. BMC Genomics, 17. LONDON: BIOMED CENTRAL LTD. ISSN 1471-2164

Matthias, Jan, Messling, Susanne and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2016). The two Dictyostelium autophagy eight proteins, ATG8a and ATG8b, associate with the autophagosome in succession. Eur. J. Cell Biol., 95 (1). S. 15 - 26. MUNICH: ELSEVIER GMBH. ISSN 1618-1298

Rastetter, Raphael H., Bloemacher, Margit, Drebber, Uta, Marko, Marija, Behrens, Juliane, Solga, Roxana, Hojeili, Sarah, Bhattacharya, Kurchi, Wunderlich, Claudia M., Wunderlich, F. Thomas, Odenthal, Margarete, Ziemann, Anja, Eichinger, Ludwig ORCID: 0000-0003-1594-6117 and Clemen, Christoph S. (2015). Coronin 2A (CRN5) expression is associated with colorectal adenoma-adenocarcinoma sequence and oncogenic signalling. BMC Cancer, 15. LONDON: BMC. ISSN 1471-2407

Swaminathan, Karthic ORCID: 0000-0002-0981-7549, Stumpf, Maria, Mueller, Rolf, Horn, Anna-Carolin, Schmidbauer, Julia, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Mueller-Taubenberger, Annette, Faix, Jan and Noegel, Angelika A. (2015). Coronin7 regulates WASP and SCAR through CRIB mediated interaction with Rac proteins. Sci Rep, 5. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Deckstein, Jaqueline, van Appeldorn, Jennifer, Tsangarides, Marios, Yiannakou, Kyriacos, Mueller, Rolf, Stumpf, Maria, Sukumaran, Salil K., Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Noegel, Angelika A. and Riyahi, Tanja Y. (2015). The Dictyostelium discoideum GPHR Ortholog Is an Endoplasmic Reticulum and Golgi Protein with Roles during Development. Eukaryot. Cell, 14 (1). S. 41 - 55. WASHINGTON: AMER SOC MICROBIOLOGY. ISSN 1535-9786

Simon, Sylvia, Schell, Ursula, Heuer, Natalie, Hager, Dominik, Albers, Michael F., Matthias, Jan, Fahrnbauer, Felix, Trauner, Dirk, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Hedberg, Christian and Hilbi, Hubert ORCID: 0000-0002-5462-9301 (2015). Inter-kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration through an IQGAP1-Cdc42-ARHGEF9-Dependent Pathway. PLoS Pathog., 11 (12). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7374

Clemen, Christoph S., Marko, Marija, Strucksberg, Karl-Heinz, Behrens, Juliane, Wittig, Ilka, Gaertner, Linda, Winter, Lilli ORCID: 0000-0002-6368-1160, Chevessier, Frederic, Matthias, Jan, Tuerk, Matthias, Tangavelou, Karthikeyan, Schuetz, Johanna, Arhzaouy, Khalid, Klopffleisch, Karsten, Hanisch, Franz-Georg, Rottbauer, Wolfgang, Bluemcke, Ingmar, Just, Steffen, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Hofmann, Andreas ORCID: 0000-0003-4408-5467 and Schroeder, Rolf (2015). VCP and PSMF1: Antagonistic regulators of proteasome activity. Biochem. Biophys. Res. Commun., 463 (4). S. 1210 - 1218. SAN DIEGO: ACADEMIC PRESS INC ELSEVIER SCIENCE. ISSN 1090-2104

Gloeckner, Gernot, Huelsmann, Norbert, Schleicher, Michael, Noegel, Angelika A., Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Gallinger, Christoph, Pawlowski, Jan ORCID: 0000-0003-2421-388X, Sierra, Roberto ORCID: 0000-0002-8657-1781, Euteneuer, Ursula, Pillet, Loic, Moustafa, Ahmed ORCID: 0000-0002-0111-3555, Platzer, Matthias, Groth, Marco ORCID: 0000-0002-9199-8990, Szafranski, Karol and Schliwa, Manfred (2014). The Genome of the Foraminiferan Reticulomyxa filosa. Curr. Biol., 24 (1). S. 11 - 19. CAMBRIDGE: CELL PRESS. ISSN 1879-0445

Araki, Tsuyoshi, Na, Jianbo, Clemen, Christoph S., Williams, Jeffrey G. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2014). Identification of the Protein Kinases Pyk3 and Phg2 as Regulators of the STATc-Mediated Response to Hyperosmolarity. PLoS One, 9 (2). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Araki, Tsuyoshi, Sasaki, Norimitsu, Kawata, Takefumi ORCID: 0000-0002-3685-4492, Eichinger, Ludwig ORCID: 0000-0003-1594-6117 and Williams, Jeffrey G. (2014). Two Dictyostelium tyrosine kinase-like kinases function in parallel, stress-induced STAT activation pathways. Mol. Biol. Cell, 25 (20). S. 3222 - 3234. BETHESDA: AMER SOC CELL BIOLOGY. ISSN 1939-4586

Arhzaouy, Khalid, Strucksberg, Karl-Heinz, Tung, Sze Man, Tangavelou, Karthikeyan, Stumpf, Maria, Faix, Jan, Schroeder, Rolf, Clemen, Christoph S. and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2012). Heteromeric p97/p97(R155C) Complexes Induce Dominant Negative Changes in Wild- Type and Autophagy 9-Deficient Dictyostelium strains. PLoS One, 7 (10). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Clemen, Christoph S., Eichinger, Ludwig ORCID: 0000-0003-1594-6117 and Schroeder, Rolf (2012). Reply: Hereditary spastic paraplegia caused by a mutation in the VCP gene VCP: A Jack of all trades in neuro- and myodegeneration? Brain, 135. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2156

Heidel, Andrew J., Lawal, Hajara M., Felder, Marius, Schilde, Christina, Helps, Nicholas R., Tunggal, Budi, Rivero, Francisco ORCID: 0000-0001-5435-6991, John, Uwe, Schleicher, Michael, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Platzer, Matthias, Noegel, Angelika A., Schaap, Pauline ORCID: 0000-0003-4500-2555 and Gloeckner, Gernot (2011). Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Genome Res., 21 (11). S. 1882 - 1892. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT. ISSN 1549-5469

Riyahi, Tanja Y., Frese, Frederike, Steinert, Michael, Omosigho, Napoleon N., Gloeckner, Gernot, Eichinger, Ludwig ORCID: 0000-0003-1594-6117, Orabi, Benoit, Williams, Robin S. B. and Noegel, Angelika A. (2011). RpkA, a Highly Conserved GPCR with a Lipid Kinase Domain, Has a Role in Phagocytosis and Anti-Bacterial Defense. PLoS One, 6 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Sillo, Alessio, Matthias, Jan, Konertz, Roman ORCID: 0000-0002-6488-1885, Bozzaro, Salvatore and Eichinger, Ludwig ORCID: 0000-0003-1594-6117 (2011). Salmonella typhimurium is pathogenic for Dictyostelium cells and subverts the starvation response. Cell Microbiol., 13 (11). S. 1793 - 1812. HOBOKEN: WILEY. ISSN 1462-5822

Clemen, Christoph S., Tangavelou, Karthikeyan, Strucksberg, Karl-Heinz, Just, Steffen, Gaertner, Linda, Regus-Leidig, Hanna, Stumpf, Maria, Reimann, Jens, Coras, Roland, Morgan, Reginald O. ORCID: 0000-0002-2059-792X, Fernandez, Maria-Pilar, Hofmann, Andreas ORCID: 0000-0003-4408-5467, Mueller, Stefan, Schoser, Benedikt ORCID: 0000-0002-2757-8131, Hanisch, Franz-Georg, Rottbauer, Wolfgang, Bluemcke, Ingmar, von Hoersten, Stephan, Eichinger, Ludwig ORCID: 0000-0003-1594-6117 and Schroeder, Rolf (2010). Strumpellin is a novel valosin-containing protein binding partner linking hereditary spastic paraplegia to protein aggregation diseases. Brain, 133. S. 2920 - 2942. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2156