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Karim, Md Rezaul, Beyan, Oya, Zappa, Achille, Costa, Ivan G. 
ORCID: 0000-0003-2890-8697, Rebholz-Schuhmann, Dietrich, Cochez, Michael ORCID: 0000-0001-5726-4638 and Decker, Stefan
(2021).
Deep learning-based clustering approaches for bioinformatics.
Brief. Bioinform., 22 (1).
S. 393 - 416.
OXFORD:
OXFORD UNIV PRESS.
ISSN 1477-4054
Kuo, Chao-Chung ORCID: 0000-0001-8879-4754, Haenzelmann, Sonja, Cetin, Nevcin Sentuerk, Frank, Stefan, Zajzon, Barna, Derks, Jens-Peter, Akhade, Vijay Suresh, Ahuja, Gaurav ORCID: 0000-0002-2837-9361, Kanduri, Chandrasekhar, Grummt, Ingrid, Kurian, Leo ORCID: 0000-0001-7466-5169 and Costa, Ivan G. ORCID: 0000-0003-2890-8697
(2019).
Detection of RNA-DNA binding sites in long noncoding RNAs.
Nucleic Acids Res., 47 (6).
OXFORD:
OXFORD UNIV PRESS.
ISSN 1362-4962
Frank, Stefan, Ahuja, Gaurav ORCID: 0000-0002-2837-9361, Bartsch, Deniz, Russ, Nicole, Yao, Wenjie, Kuo, Joseph Chao-Chung, Derks, Jens-Peter, Akhade, Vijay Suresh, Kargapolova, Yulia, Georgomanolis, Theodore, Messling, Jan-Erik ORCID: 0000-0003-3843-0041, Gramm, Marie, Brant, Lilija, Rehimi, Rizwan, Vargas, Natalia Emilse, Kuroczik, Alina, Yang, Tsun-Po, Sahito, Raja Ghazanfar Ali, Franzen, Julia, Hescheler, Juergen, Sachinidis, Agapios, Peifer, Martin, Rada-Iglesias, Alvaro ORCID: 0000-0001-7137-1341, Kanduri, Meena, Costa, Ivan G. ORCID: 0000-0003-2890-8697, Kanduri, Chandrasekhar, Papantonis, Argyris ORCID: 0000-0001-7551-1073 and Kurian, Leo ORCID: 0000-0001-7466-5169
(2019).
yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs.
Cell Stem Cell, 24 (2).
S. 318 - 336.
CAMBRIDGE:
CELL PRESS.
ISSN 1875-9777
Zirkel, Anne, Nikolic, Milos ORCID: 0000-0003-0029-7601, Sofiadis, Konstantinos, Mallm, Jan-Philipp, Brackley, Chris A., Gothe, Henrike, Drechsel, Oliver, Becker, Christian, Altmueller, Janine, Josipovic, Natasa, Georgomanolis, Theodore, Brant, Lilija, Franzen, Julia, Koker, Mirjam, Gusmao, Eduardo G., Costa, Ivan G. ORCID: 0000-0003-2890-8697, Ullrich, Roland T., Wagner, Wolfgang ORCID: 0000-0002-1971-3217, Roukos, Vassilis ORCID: 0000-0002-5065-3937, Nuernberg, Peter, Marenduzzo, Davide ORCID: 0000-0003-3974-4915, Rippe, Karsten ORCID: 0000-0001-9951-9395 and Papantonis, Argyris ORCID: 0000-0001-7551-1073
(2018).
HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types.
Mol. Cell, 70 (4).
S. 730 - 751.
CAMBRIDGE:
CELL PRESS.
ISSN 1097-4164
Brylka, Laura J., Koeppert, Sina, Babler, Anne, Kratz, Beate, Denecke, Bernd, Yorgan, Timur A., Etich, Julia ORCID: 0000-0003-3238-6692, Costa, Ivan G. ORCID: 0000-0003-2890-8697, Brachvogel, Bent, Boor, Peter ORCID: 0000-0001-9921-4284, Schinke, Thorsten and Jahnen-Dechent, Willi
(2017).
Post-weaning epiphysiolysis causes distal femur dysplasia and foreshortened hindlimbs in fetuin-A-deficient mice.
PLoS One, 12 (10).
SAN FRANCISCO:
PUBLIC LIBRARY SCIENCE.
ISSN 1932-6203
Kolovos, Petros ORCID: 0000-0002-0787-6158, Georgomanolis, Theodore, Koeferle, Anna, Larkin, Joshua D., Brant, Lilija, Nikolic, Milos ORCID: 0000-0003-0029-7601, Gusmao, Eduardo G., Zirkel, Anne, Knoch, Tobias A., van Ijcken, Wilfred F., Cook, Peter R., Costa, Ivan G. ORCID: 0000-0003-2890-8697, Grosveld, Frank G. and Papantonis, Argyris ORCID: 0000-0001-7551-1073
(2016).
Binding of nuclear factor kappa B to noncanonical consensus sites reveals its multimodal role during the early inflammatory response.
Genome Res., 26 (11).
S. 1478 - 1490.
COLD SPRING HARBOR:
COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT.
ISSN 1549-5469