Universität zu Köln

Journal Article

Beggel, Bastian, Neumann-Fraune, Maria, Kaiser, Rolf, Verheyen, Jens and Lengauer, Thomas (2013). Inferring Short-Range Linkage Information from Sequencing Chromatograms. PLoS One, 8 (12). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

De Luca, Andrea, Pezzotti, Patrizio, Boucher, Charles, Doering, Matthias, Incardona, Francesca ORCID: 0000-0002-7386-8551, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640, Pfeifer, Nico, Schuelter, Eugen, Vandamme, Anne-Mieke, Zazzi, Maurizio and Geretti, Anna Maria (2019). Clinical use, efficacy, and durability of maraviroc for antiretroviral therapy in routine care: A European survey. PLoS One, 14 (11). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Doering, Matthias, Borrego, Pedro, Buech, Joachim, Martins, Andreia, Friedrich, Georg, Camacho, Ricardo Jorge, Eberle, Josef, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640, Taveira, Nuno ORCID: 0000-0003-0176-5585 and Pfeifer, Nico (2016). Geno2pheno (coreceptor-hiv2): a new diagnostic tool for the genotypic determination of HIV-2 coreceptor usage. J. Int. AIDS Soc., 19. CHICHESTER: JOHN WILEY & SONS LTD. ISSN 1758-2652

Doering, Matthias, Borrego, Pedro ORCID: 0000-0002-1949-9484, Buech, Joachim, Martins, Andreia, Friedrich, Georg, Camacho, Ricardo Jorge, Eberle, Josef, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640, Taveira, Nuno ORCID: 0000-0003-0176-5585 and Pfeifer, Nico ORCID: 0000-0002-4647-8566 (2016). A genotypic method for determining HIV-2 coreceptor usage enables epidemiological studies and clinical decision support. Retrovirology, 13. LONDON: BIOMED CENTRAL LTD. ISSN 1742-4690

Doering, Matthias, Buech, Joachim, Friedrich, Georg, Pironti, Alejandro, Kalaghatgi, Prabhav, Knops, Elena, Heger, Eva, Obermeier, Martin, Daeumer, Martin, Thielen, Alexander, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640 and Pfeifer, Nico (2018). geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data. Nucleic Acids Res., 46 (W1). S. W271 - 7. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Heger, Eva, Kaiser, Rolf, Knops, Elena, Neumann-Fraune, Maria, Schuelter, Eugen, Pironti, Alejandro, Lengauer, Thomas ORCID: 0000-0003-3801-2640, Walter, Hauke and Sierra, Saleta (2017). Results of the first international HIV-1 coreceptor proficiency panel test. J. Clin. Virol., 93. S. 53 - 57. AMSTERDAM: ELSEVIER SCIENCE BV. ISSN 1873-5967

Horemheb-Rubio, Gibran, Eggeling, Ralf, Schmeisser, Norbert, Pfeifer, Nico ORCID: 0000-0002-4647-8566, Lengauer, Thomas, Gaertner, Barbara C., Prifert, Christiane, Kochanek, Matthias, Scheid, Christoph, Adams, Ortwin and Kaiser, Rolf ORCID: 0000-0002-2640-2548 (2022). Respiratory viruses dynamics and interactions: ten years of surveillance in central Europe. BMC Public Health, 22 (1). LONDON: BMC. ISSN 1471-2458

Kalaghatgi, Prabhav, Sikorski, Anna Maria, Knops, Elena, Rupp, Daniel, Sierra, Saleta, Heger, Eva, Neumann-Fraune, Maria, Beggel, Bastian, Walker, Andreas ORCID: 0000-0002-8736-0863, Timm, Joerg, Walter, Hauke, Obermeier, Martin, Kaiser, Rolf, Bartenschlager, Ralf ORCID: 0000-0001-5601-9307 and Lengauer, Thomas ORCID: 0000-0003-3801-2640 (2016). Geno2pheno([HCV]) - A Web-based Interpretation System to Support Hepatitis C Treatment Decisions in the Era of Direct-Acting Antiviral Agents. PLoS One, 11 (5). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Kitanovski, Simo ORCID: 0000-0003-2909-5376, Horemheb-Rubio, Gibran, Adams, Ortwin, Gartner, Barbara, Lengauer, Thomas, Hoffmann, Daniel ORCID: 0000-0003-2973-7869 and Kaiser, Rolf (2021). Rhinovirus prevalence as indicator for efficacy of measures against SARS-CoV-2. BMC Public Health, 21 (1). LONDON: BMC. ISSN 1471-2458

Knops, Elena, Kalaghatgi, Prabhav, Neumann-Fraune, Maria, Heger, Eva, Schuelter, Eugen, Timm, Joerg, Walker, Andreas, Lengauer, Thomas ORCID: 0000-0003-3801-2640, Keitel, Verena, Goeser, Tobias, Esser, Stefan, von Hahn, Thomas, Pauser, Iris, Qurishi, Nazifa, Roemer, Katja, Scholten, Stefan, Daeumer, Martin, Obermeier, Martin, Kaiser, Rolf and Sierra, Saleta (2016). Hepatitis C virus screening project of patients on current anti-HCV therapy. J. Int. AIDS Soc., 19. CHICHESTER: JOHN WILEY & SONS LTD. ISSN 1758-2652

Luebke, Nadine, Di Cristanziano, Veronica, Sierra, Saleta, Knops, Elena, Schuelter, Eugen, Jensen, Bjorn, Oette, Mark, Lengauer, Thomas ORCID: 0000-0003-3801-2640 and Kaiser, Rolf (2015). Proviral DNA as a Target for HIV-1 Resistance Analysis. Intervirology, 58 (3). S. 184 - 190. BASEL: KARGER. ISSN 1423-0100

Luebke, Nadine, Pironti, Alejandro, Knops, Elena, Schuelter, Eugen, Jensen, Bjoern, Oette, Mark, Esser, Stefan, Lengauer, Thomas ORCID: 0000-0003-3801-2640 and Kaiser, Rolf (2016). Association of therapeutic failure with low-level viremia in HIV-infected patients in the Arevir/RESINA cohort in Germany. J. Int. AIDS Soc., 19. CHICHESTER: JOHN WILEY & SONS LTD. ISSN 1758-2652

Oette, Mark, Reuter, Stefan, Kaiser, Rolf, Jensen, Bjoern, Lengauer, Thomas, Faetkenheuer, Gerd, Knechten, Heribert, Hower, Martin, Sagir, Abdurrahman, Pfister, Herbert and Haeussinger, Dieter (2013). Ambulatory care for HIV-infected patients: differences in outcomes between hospital-based units and private practices: analysis of the RESINA cohort. Eur. J. Med. Res., 18. LONDON: BMC. ISSN 2047-783X

Pironti, Alejandro, Pfeifer, Nico, Kaiser, Rolf, Walter, Hauke and Lengauer, Thomas ORCID: 0000-0003-3801-2640 (2014). Improved therapy-success prediction with GSS estimated from clinical HIV-1 sequences. J. Int. AIDS Soc., 17. S. 155 - 157. CHICHESTER: JOHN WILEY & SONS LTD. ISSN 1758-2652

Pironti, Alejandro, Pfeifer, Nico, Walter, Hauke, Jensen, Bjorn-Erik O., Zazzi, Maurizio ORCID: 0000-0002-0344-6281, Gomes, Perpetua ORCID: 0000-0003-3271-8255, Kaiser, Rolf and Lengauer, Thomas ORCID: 0000-0003-3801-2640 (2017). Using drug exposure for predicting drug resistance - A data-driven genotypic interpretation tool. PLoS One, 12 (4). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1932-6203

Pironti, Alejandro, Sierra, Saleta, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640 and Pfeifer, Nico ORCID: 0000-0002-4647-8566 (2015). Effects of sequence alterations on results from genotypic tropism testing. J. Clin. Virol., 65. S. 68 - 74. AMSTERDAM: ELSEVIER SCIENCE BV. ISSN 1873-5967

Pironti, Alejandro, Sierra, Saleta, Kaiser, Rolf, Lengauer, Thomas ORCID: 0000-0003-3801-2640 and Pfeifer, Nico ORCID: 0000-0002-4647-8566 (2015). Effects of sequence alterations on results from genotypic tropism testing. J. Clin. Virol., 65. S. 68 - 74. AMSTERDAM: ELSEVIER SCIENCE BV. ISSN 1873-5967

Pironti, Alejandro, Walter, Hauke, Pfeifer, Nico ORCID: 0000-0002-4647-8566, Knops, Elena, Luebke, Nadine, Buech, Joachim, Di Giambenedetto, Simona, Kaiser, Rolf and Lengauer, Thomas ORCID: 0000-0003-3801-2640 (2017). Determination of Phenotypic Resistance Cutoffs From Routine Clinical Data. JAIDS, 74 (5). S. E129 - 9. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS. ISSN 1077-9450

Schelhorn, Sven-Eric, Fischer, Matthias, Tolosi, Laura, Altmueller, Janine, Nuernberg, Peter, Pfister, Herbert, Lengauer, Thomas and Berthold, Frank (2013). Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes. PLoS Comput. Biol., 9 (10). SAN FRANCISCO: PUBLIC LIBRARY SCIENCE. ISSN 1553-7358

Schuelter, Eugen, Oette, Mark, Balduin, Melanie, Reuter, Stefan, Rockstroh, Juergen, Faetkenheuer, Gerd, Esser, Stefan, Lengauer, Thomas, Agacfidan, Ali, Pfister, Herbert, Kaiser, Rolf and Akguel, Baki (2011). HIV prevalence and route of transmission in Turkish immigrants living in North-Rhine Westphalia, Germany. Med. Microbiol. Immunol., 200 (4). S. 219 - 224. NEW YORK: SPRINGER. ISSN 0300-8584

Sierra, Saleta, Kaiser, Rolf, Luebke, Nadine, Thielen, Alexander, Schuelter, Eugen, Heger, Eva, Daeumer, Martin, Reuter, Stefan, Esser, Stefan, Faetkenheuer, Gerd, Pfister, Herbert, Oette, Mark and Lengauer, Thomas (2011). Prediction of HIV-1 Coreceptor Usage (Tropism) by Sequence Analysis using a Genotypic Approach. J. Vis. Exp. (58). CAMBRIDGE: JOURNAL OF VISUALIZED EXPERIMENTS. ISSN 1940-087X

Thielen, Alexander, Sichtig, Nadine, Kaiser, Rolf, Lam, Jeffrey, Harrigan, P. Richard and Lengauer, Thomas (2010). Improved Prediction of HIV-1 Coreceptor Usage with Sequence Information from the Second Hypervariable Loop of gp120. J. Infect. Dis., 202 (9). S. 1435 - 1444. CARY: OXFORD UNIV PRESS INC. ISSN 1537-6613