Universität zu Köln

Journal Article

Ahuja, Gaurav ORCID: 0000-0002-2837-9361, Bartsch, Deniz, Yao, Wenjie, Geissen, Simon, Frank, Stefan, Aguirre, Aitor ORCID: 0000-0002-1383-2792, Russ, Nicole, Messling, Jan-Erik ORCID: 0000-0003-3843-0041, Dodzian, Joanna, Lagerborg, Kim A., Vargas, Natalia Emilse, Muck, Joscha Sergej, Brodesser, Susanne, Baldus, Stephan, Sachinidis, Agapios, Hescheler, Juergen, Dieterich, Christoph, Trifunovic, Aleksandra, Papantonis, Argyris ORCID: 0000-0001-7551-1073, Petrascheck, Michael, Klinke, Anna, Jain, Mohit, Valenzano, Dario Riccardo and Kurian, Leo ORCID: 0000-0001-7466-5169 (2019). Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart. EMBO Rep., 20 (4). HOBOKEN: WILEY. ISSN 1469-3178

Boehm, Volker ORCID: 0000-0001-7588-9842, Britto-Borges, Thiago, Steckelberg, Anna-Lena ORCID: 0000-0001-7988-9946, Singh, Kusum K., Gerbracht, Jennifer V. ORCID: 0000-0002-3377-4649, Gueney, Elif, Blazquez, Lorea, Altmueller, Janine, Dieterich, Christoph and Gehring, Niels H. (2018). Exon Junction Complexes Suppress Spurious Splice Sites to Safeguard Transcriptome Integrity. Mol. Cell, 72 (3). S. 482 - 503. CAMBRIDGE: CELL PRESS. ISSN 1097-4164

Boehm, Volker ORCID: 0000-0001-7588-9842, Kueckelmann, Sabrina ORCID: 0000-0001-8070-8823, Gerbracht, Jennifer, V, Kallabis, Sebastian ORCID: 0000-0003-1580-7109, Britto-Borges, Thiago, Altmueller, Janine, Krueger, Marcus, Dieterich, Christoph and Gehring, Niels H. (2021). SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity. Nat. Commun., 12 (1). BERLIN: NATURE PORTFOLIO. ISSN 2041-1723

Boileau, Etienne, Altmueller, Janine, Naarmann-de Vries, Isabel S. and Dieterich, Christoph (2021). A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover. Brief. Bioinform., 22 (6). OXFORD: OXFORD UNIV PRESS. ISSN 1477-4054

Boileau, Etienne, Li, Xue, Naarmann-de Vries, Isabel S., Becker, Christian, Casper, Ramona, Altmueller, Janine, Leuschner, Florian and Dieterich, Christoph (2022). Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI. Front. Genet., 13. LAUSANNE: FRONTIERS MEDIA SA. ISSN 1664-8021

Dal Magro, Christina, Keller, Patrick, Kotter, Annika, Werner, Stephan, Duarte, Victor, Marchand, Virginie ORCID: 0000-0002-8537-1139, Ignarski, Michael ORCID: 0000-0001-6057-7694, Freiwald, Anja, Mueller, Roman-Ulrich, Dieterich, Christoph, Motorin, Yuri, Butter, Falk ORCID: 0000-0002-7197-7279, Atta, Mohamed and Helm, Mark ORCID: 0000-0002-0154-0928 (2018). A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure. Angew. Chem.-Int. Edit., 57 (26). S. 7893 - 7898. WEINHEIM: WILEY-V C H VERLAG GMBH. ISSN 1521-3773

Gerbracht, Jennifer, V, Boehm, Volker, Britto-Borges, Thiago, Kallabis, Sebastian, Wiederstein, Janica L., Ciriello, Simona, Aschemeier, Dominik U., Krueger, Marcus, Frese, Christian K., Altmueller, Janine, Dieterich, Christoph and Gehring, Niels H. ORCID: 0000-0001-7792-1164 (2020). CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex. Nucleic Acids Res., 48 (15). S. 8626 - 8645. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Ghatak, Sushmita, Yeung, Ching-Yan Chloe ORCID: 0000-0002-7076-8109, Tellkamp, Frederik ORCID: 0000-0002-0473-7320, Guenschmann, Christian, Dieterich, Christoph, Yeroslaviz, Assa ORCID: 0000-0001-9638-4026, Habermand, Bianca, Pombo, Ana ORCID: 0000-0002-7493-6288, Niessen, Carien M. and Wickstroem, Sara A. (2016). Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment. Nat. Cell Biol., 18 (8). S. 864 - 887. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4679

Ignarski, Michael ORCID: 0000-0001-6057-7694, Rill, Constantin, Kaiser, Rainer W. J., Kaldirim, Madlen, Neuhaus, Rene, Esmaillie, Reza, Li, Xinping, Klein, Corinna, Bohl, Katrin, Petersen, Maike, Frese, Christian K., Hoehne, Martin, Atanassov, Ilian, Rinschen, Markus M., Hoepker, Katja, Schermer, Bernhard ORCID: 0000-0002-5194-9000, Benzing, Thomas, Dieterich, Christoph, Fabretti, Francesca and Mueller, Roman-Ulrich (2019). The RNA-Protein Interactome of Differentiated Kidney Tubular Epithelial Cells. J. Am. Soc. Nephrol., 30 (4). S. 564 - 577. WASHINGTON: AMER SOC NEPHROLOGY. ISSN 1533-3450

Kaiser, Rainer W. J., Ignarski, Michael ORCID: 0000-0001-6057-7694, Van Nostrand, Eric L., Frese, Christian K., Jain, Manaswita, Cukoski, Sadrija, Heinen, Heide, Schaechter, Melanie, Seufert, Lisa, Bunte, Konstantin, Frommolt, Peter ORCID: 0000-0002-1966-8014, Keller, Patrick, Helm, Mark, Bohl, Katrin, Hoehne, Martin, Schermer, Bernhard, Benzing, Thomas, Hoepker, Katja, Dieterich, Christoph, Yeo, Gene W., Mueller, Roman-Ulrich and Fabretti, Francesca (2019). A protein-RNA interaction atlas of the ribosome biogenesis factor AATF. Sci Rep, 9. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Kmietczyk, Vivien, Riechert, Eva ORCID: 0000-0003-4876-7860, Kalinski, Laura, Boileau, Etienne, Malovrh, Ellen ORCID: 0000-0003-0911-6125, Malone, Brandon, Gorska, Agnieszka, Hofmann, Christoph ORCID: 0000-0002-3389-6582, Varma, Eshita, Juergensen, Lonny, Kamuf-Schenk, Verena, Altmueller, Janine, Tappu, Rewati, Busch, Martin, Most, Patrick, Katus, Hugo A., Dieterich, Christoph and Voelkers, Mirko (2019). m(6)A-mRNA methylation regulates cardiac gene expression and cellular growth. Life Sci. Alliance, 2 (2). COLD SPRING HARBOR: LIFE SCIENCE ALLIANCE LLC. ISSN 2575-1077

Lee, Hyun Ju, Bartsch, Deniz, Xiao, Cally ORCID: 0000-0001-7172-3175, Guerrero, Santiago ORCID: 0000-0003-3473-7214, Ahuja, Gaurav ORCID: 0000-0002-2837-9361, Schindler, Christina, Moresco, James J., Yates, John R., III, Gebauer, Fatima ORCID: 0000-0001-7563-0013, Bazzi, Hisham ORCID: 0000-0001-8388-4005, Dieterich, Christoph, Kurian, Leo ORCID: 0000-0001-7466-5169 and Vilchez, David ORCID: 0000-0002-0801-0743 (2017). A post-transcriptional program coordinated by CSDE1 prevents intrinsic neural differentiation of human embryonic stem cells. Nat. Commun., 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Morgner, Jessica, Ghatak, Sushmita, Jakobi, Tobias ORCID: 0000-0002-3906-0401, Dieterich, Christoph, Aumailley, Monique and Wickstroem, Sara A. (2015). Integrin-linked kinase regulates the niche of quiescent epidermal stem cells. Nat. Commun., 6. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Mourier, Arnaud, Motori, Elisa, Brandt, Tobias, Lagouge, Marie, Atanassov, Ilian ORCID: 0000-0001-8259-2545, Galinier, Anne ORCID: 0000-0003-2454-5681, Rappl, Gunter, Brodesser, Susanne, Hultenby, Kjell, Dieterich, Christoph and Larsson, Nils-Goran ORCID: 0000-0001-5100-996X (2015). Mitofusin 2 is required to maintain mitochondrial coenzyme Q levels. J. Cell Biol., 208 (4). S. 429 - 443. NEW YORK: ROCKEFELLER UNIV PRESS. ISSN 1540-8140

Mourier, Arnaud, Motori, Elisa, Brandt, Tobias, Lagouge, Marie, Atanassov, Ilian ORCID: 0000-0001-8259-2545, Galinier, Anne ORCID: 0000-0003-2454-5681, Rappl, Gunter, Brodesser, Susanne, Hultenby, Kjell, Dieterich, Christoph and Larsson, Nils-Goran ORCID: 0000-0001-5100-996X (2015). Mitofusin 2 is required to maintain mitochondrial coenzyme Q levels. J. Cell Biol., 208 (4). S. 429 - 443. NEW YORK: ROCKEFELLER UNIV PRESS. ISSN 1540-8140

Nakamura, Shuhei ORCID: 0000-0002-1488-8317, Karalay, Oezlem, Jaeger, Philipp S., Horikawa, Makoto ORCID: 0000-0002-5094-7070, Klein, Corinna, Nakamura, Kayo, Latza, Christian, Templer, Sven E., Dieterich, Christoph and Antebi, Adam (2016). Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals. Nat. Commun., 7. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Noormohammadi, Alireza, Khodakarami, Amirabbas, Gutierrez-Garcia, Ricardo, Lee, Hyun Ju, Koyuncu, Seda, Nig, Tim Ko, Schindler, Christina, Saez, Isabel, Fatima, Azra, Dieterich, Christoph and Vilchez, David ORCID: 0000-0002-0801-0743 (2016). Somatic increase of CCT8 mimics proteostasis of human pluripotent stem cells and extends C-elegans lifespan. Nat. Commun., 7. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Piechotta, Michael, Naarmann-de Vries, Isabel S., Wang, Qi, Altmueller, Janine and Dieterich, Christoph ORCID: 0000-0001-9468-6311 (2022). RNA modification mapping with JACUSA2. Genome Biol., 23 (1). LONDON: BMC. ISSN 1474-760X

Pradas-Juni, Marta, Hansmeier, Nils R., Link, Jenny C., Schmidt, Elena ORCID: 0000-0003-0829-1423, Larsen, Bjork Ditlev, Klemm, Paul ORCID: 0000-0002-5985-1737, Meola, Nicola, Topel, Hande ORCID: 0000-0001-5743-4019, Loureiro, Rute, Dhaouadi, Ines ORCID: 0000-0002-2762-6500, Kiefer, Christoph A., Schwarzer, Robin, Khani, Sajjad, Oliverio, Matteo, Awazawa, Motoharu, Frommolt, Peter ORCID: 0000-0002-1966-8014, Heeren, Joerg, Scheja, Ludger, Heine, Markus, Dieterich, Christoph, Buening, Hildegard, Yang, Ling, Cao, Haiming, De Jesus, Dario F., Kulkarni, Rohit N., Zevnik, Branko ORCID: 0000-0001-7845-9522, Troeder, Simon E., Knippschild, Uwe, Edwards, Peter A., Lee, Richard G., Yamamoto, Masayuki, Ulitsky, Igor, Fernandez-Rebollo, Eduardo, Vallim, Thomas Q. de Aguiar and Kornfeld, Jan-Wilhelm ORCID: 0000-0002-6802-4442 (2020). A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism. Nat. Commun., 11 (1). LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723

Rajman, Marek ORCID: 0000-0001-9060-2432, Metge, Franziska, Fiore, Roberto, Khudayberdiev, Sharof, Aksoy-Aksel, Ayla, Bicker, Silvia, Reschke, Cristina Ruedell, Raoof, Rana ORCID: 0000-0001-5418-1407, Brennan, Gary P., Delanty, Norman, Farrell, Michael A., O'Brien, Donncha F., Bauer, Sebastian, Norwood, Braxton, Veno, Morten T., Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804, Kjems, Jorgen ORCID: 0000-0003-4128-9317, Rosenow, Felix, Henshall, David C., Dieterich, Christoph and Schratt, Gerhard (2017). A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses. Embo J., 36 (12). S. 1770 - 1788. HOBOKEN: WILEY. ISSN 1460-2075

Saez, Isabel, Gerbracht, Jennifer, V, Koyuncu, Seda, Lee, Hyun Ju, Horn, Moritz, Kroef, Virginia, Denzel, Martin S., Dieterich, Christoph, Gehring, Niels H. ORCID: 0000-0001-7792-1164 and Vilchez, David ORCID: 0000-0002-0801-0743 (2020). The E3 ubiquitin ligase UBR5 interacts with the H/ACA ribonucleoprotein complex and regulates ribosomal RNA biogenesis in embryonic stem cells. FEBS Lett., 594 (1). S. 175 - 189. HOBOKEN: WILEY. ISSN 1873-3468

Saez, Isabel, Koyuncu, Seda, Gutierrez-Garcia, Ricardo, Dieterich, Christoph and Vilchez, David ORCID: 0000-0002-0801-0743 (2018). Insights into the ubiquitin-proteasome system of human embryonic stem cells. Sci Rep, 8. LONDON: NATURE PUBLISHING GROUP. ISSN 2045-2322

Schlautmann, Lena P., Lackmann, Jan-Wilm ORCID: 0000-0001-8182-8034, Altmueller, Janine, Dieterich, Christoph ORCID: 0000-0001-9468-6311, Boehm, Volker ORCID: 0000-0001-7588-9842 and Gehring, Niels H. (2022). Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance. Nucleic Acids Res., 50 (10). S. 5899 - 5919. OXFORD: OXFORD UNIV PRESS. ISSN 1362-4962

Tain, Luke S., Sehlke, Robert, Jain, Chirag, Chokkalingam, Manopriya, Nagaraj, Nagarjuna, Essers, Paul, Rassner, Mark, Groenke, Sebastian, Froelich, Jenny, Dieterich, Christoph, Mann, Matthias, Alic, Nazif ORCID: 0000-0003-0356-6600, Beyer, Andreas ORCID: 0000-0002-3891-2123 and Partridge, Linda ORCID: 0000-0001-9615-0094 (2017). A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. Mol. Syst. Biol., 13 (9). HOBOKEN: WILEY. ISSN 1744-4292

Talyan, Sweta ORCID: 0000-0002-7160-6742, Filipow, Samantha ORCID: 0000-0002-9290-1273, Ignarski, Michael ORCID: 0000-0001-6057-7694, Smieszek, Magdalena, Chen, He ORCID: 0000-0002-7616-8438, Kuehne, Lucas, Butt, Linus, Gobel, Heike, Hoyer-Allo, K. Johanna R., Koehler, Felix C., Altmuller, Janine ORCID: 0000-0003-4372-1521, Brinkkoeter, Paul, Schermer, Bernhard, Benzing, Thomas, Kann, Martin ORCID: 0000-0003-2956-1699, Mueller, Roman-Ulrich and Dieterich, Christoph (2021). CALINCA-A Novel Pipeline for the Identification of lncRNAs in Podocyte Disease. Cells, 10 (3). BASEL: MDPI. ISSN 2073-4409

Wallmeroth, Damaris ORCID: 0000-0003-3437-4070, Lackmann, Jan-Wilm ORCID: 0000-0001-8182-8034, Kueckelmann, Sabrina ORCID: 0000-0001-8070-8823, Altmueller, Janine, Dieterich, Christoph ORCID: 0000-0001-9468-6311, Boehm, Volker ORCID: 0000-0001-7588-9842 and Gehring, Niels H. (2022). Human UPF3A and UPF3B enable fault-tolerant activation of nonsense-mediated mRNA decay. Embo J., 41 (10). HOBOKEN: WILEY. ISSN 1460-2075

Wang, Qi ORCID: 0000-0002-7827-4808, Boenigk, Sven, Boehm, Volker ORCID: 0000-0001-7588-9842, Gehring, Niels, Altmueller, Janine and Dieterich, Christoph ORCID: 0000-0001-9468-6311 (2021). Single-cell transcriptome sequencing on the Nanopore platform with ScNapBar. RNA, 27 (7). S. 763 - 771. COLD SPRING HARBOR: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT. ISSN 1469-9001

Wang, Xueqing, Jiang, Quanlong, Song, Yuanyuan, He, Zhidong, Zhang, Hongdao, Song, Mengjiao, Zhang, Xiaona ORCID: 0000-0001-6479-3562, Dai, Yumin, Karalay, Oezlem, Dieterich, Christoph, Antebi, Adam, Wu, Ligang, Han, Jing-Dong J. and Shen, Yidong (2022). Ageing induces tissue-specific transcriptomic changes in Caenorhabditis elegans. Embo J., 41 (8). HOBOKEN: WILEY. ISSN 1460-2075

Yigit, Goekhan, Saida, Ken, DeMarzo, Danielle, Miyake, Noriko, Fujita, Atsushi, Yang Tan, Tiong, White, Susan M., Wadley, Alexandrea, Toliat, Mohammad R., Motameny, Susanne, Franitza, Marek, Stutterd, Chloe A., Chong, Pin F., Kira, Ryutaro ORCID: 0000-0002-6878-5081, Sengoku, Toru ORCID: 0000-0001-9461-8714, Ogata, Kazuhiro, Guillen Sacoto, Maria J., Fresen, Christine, Beck, Bodo B., Nuernberg, Peter, Dieterich, Christoph, Wollnik, Bernd, Matsumoto, Naomichi and Altmueller, Janine (2020). The recurrent postzygotic pathogenic variant p.Glu47Lys in RHOA causes a novel recognizable neuroectodermal phenotype. Hum. Mutat., 41 (3). S. 591 - 600. HOBOKEN: WILEY. ISSN 1098-1004

Zhou, Yifei ORCID: 0000-0003-0088-6262, Wang, Xueqing, Song, Mengjiao, He, Zhidong, Cui, Guizhong ORCID: 0000-0001-6394-2773, Peng, Guangdun ORCID: 0000-0002-8586-0637, Dieterich, Christoph, Antebi, Adam, Jing, Naihe ORCID: 0000-0003-1509-6378 and Shen, Yidong (2019). A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing. Nat. Commun., 10. LONDON: NATURE PUBLISHING GROUP. ISSN 2041-1723