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Bolten, Eva, Schliep, Alexander, Schneckener, Sebastian, Schomburg, Dietmar and Schrader, Rainer (2001). Clustering Protein Sequences - Structure Prediction by transitive homology. Bioinformatics, 17 (10). pp. 935-941. Oxford University Press.
Bolten, Eva, Schliep, Alexander, Schneckener, Sebastian, Schomburg, Dietmar and Schrader, Rainer (2001). Strongly Connected Components can Predict Protein Structure. Elsevier.
Pipenbacher, Peter, Schliep, Alexander, Schneckener, Sebastian, Schönhuth, Alexander, Schomburg, Dietmar and Schrader, Rainer (2002). ProClust: Improved clustering of protein sequences with an extended graph-based approach. Bioinformatics, 18 (Sup. 2). S182-S191. Oxford University Press.
Schliep, Alexander (2001). A Bayesian Approach to Learning Hidden Markov Model Topology with Applications to Biological Sequence Analysis. PhD thesis, Universität zu Köln.