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Journal Article
Bolten, Eva, Schliep, Alexander, Schneckener, Sebastian, Schomburg, Dietmar and Schrader, Rainer (2001). Clustering Protein Sequences - Structure Prediction by transitive homology. Bioinformatics, 17 (10). pp. 935-941. Oxford University Press.
Pipenbacher, Peter, Schliep, Alexander, Schneckener, Sebastian, Schönhuth, Alexander, Schomburg, Dietmar and Schrader, Rainer (2002). ProClust: Improved clustering of protein sequences with an extended graph-based approach. Bioinformatics, 18 (Sup. 2). S182-S191. Oxford University Press.
Thesis
Schliep, Alexander (2001). A Bayesian Approach to Learning Hidden Markov Model Topology with Applications to Biological Sequence Analysis. PhD thesis, Universität zu Köln.
Other
Bolten, Eva, Schliep, Alexander, Schneckener, Sebastian, Schomburg, Dietmar and Schrader, Rainer (2001). Strongly Connected Components can Predict Protein Structure. Elsevier.