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Journal Article

Ianni, Alessandro ORCID: 0000-0001-7398-589X, Kumari, Poonam, Tarighi, Shahriar ORCID: 0000-0003-3807-9212, Simonet, Nicolas G., Popescu, Daniela, Guenther, Stefan, Holper, Soraya, Schmidt, Andreas, Smolka, Christian ORCID: 0000-0003-2341-2406, Yue, Shijing, Kruger, Marcus, Fiorillo, Claudia, Vaquero, Alejandro, Bober, Eva and Braun, Thomas ORCID: 0000-0002-6165-4804 (2021). SIRT7-dependent deacetylation of NPM promotes p53 stabilization following UV-induced genotoxic stress. Proc. Natl. Acad. Sci. U. S. A., 118 (5). WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Seibert, Markus ORCID: 0000-0001-5708-4856, Kruger, Marcus, Watson, Nikolaus A., Sen, Onur ORCID: 0000-0002-6685-7010, Daum, John R., Slotman, Johan A. ORCID: 0000-0001-9705-9620, Braun, Thomas ORCID: 0000-0002-6165-4804, Houtsmuller, Adriaan B., Gorbsky, Gary J., Jacob, Ralf ORCID: 0000-0002-9251-6578, Kracht, Michael, Higgins, Jonathan M. G. and Schmitz, M. Lienhard ORCID: 0000-0002-6984-7192 (2019). CDK1-mediated phosphorylation at H2B serine 6 is required for mitotic chromosome segregation. J. Cell Biol., 218 (4). S. 1164 - 1182. NEW YORK: ROCKEFELLER UNIV PRESS. ISSN 1540-8140

Singh, Indrabahadur ORCID: 0000-0002-1474-7928, Contreras, Adriana, Cordero, Julio, Rubio, Karla ORCID: 0000-0002-8337-3106, Dobersch, Stephanie, Guenther, Stefan, Jeratsch, Sylvia, Mehta, Aditi, Krueger, Marcus ORCID: 0000-0003-2008-4582, Graumann, Johannes ORCID: 0000-0002-3015-5850, Seeger, Werner ORCID: 0000-0003-1946-0894, Dobreva, Gergana ORCID: 0000-0002-4814-9416, Braun, Thomas ORCID: 0000-0002-6165-4804 and Barreto, Guillermo ORCID: 0000-0002-7777-4712 (2018). MiCEE is a ncRNA-protein complex that mediates epigenetic silencing and nucleolar organization. Nature Genet., 50 (7). S. 990 - 1005. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1718

Lang, Franziska, Khaghani, Solmaz, Tuerk, Clara, Wiederstein, Janica Lea, Hoelper, Soraya, Piller, Tanja, Nogara, Leonardo ORCID: 0000-0002-7009-8707, Blaauw, Bert, Guenther, Stefan, Mueller, Stefan, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2018). Single Muscle Fiber Proteomics Reveals Distinct Protein Changes in Slow and Fast Fibers during Muscle Atrophy. J. Proteome Res., 17 (10). S. 3333 - 3348. WASHINGTON: AMER CHEMICAL SOC. ISSN 1535-3907

Wiederstein, Janica Lea, Nolte, Hendrik, Guenther, Stefan, Piller, Tanja, Baraldo, Martina, Kostin, Sawa, Bloch, Wilhelm, Schindler, Natalie ORCID: 0000-0001-7281-4597, Sandri, Marco, Blaauw, Bert, Braun, Thomas ORCID: 0000-0002-6165-4804, Hoelper, Soraya and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2018). Skeletal Muscle-Specific Methyltransferase METTL21C Trimethylates p97 and Regulates Autophagy-Associated Protein Breakdown. Cell Reports, 23 (5). S. 1342 - 1357. CAMBRIDGE: CELL PRESS. ISSN 2211-1247

Lang, Franziska, Aravamudhan, Sriram, Nolte, Hendrik, Tuerk, Clara, Hoelper, Soraya, Mueller, Stefan, Guenther, Stefan, Blaauw, Bert, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2017). Dynamic changes in the mouse skeletal muscle proteome during denervation-induced atrophy. Dis. Model. Mech., 10 (7). S. 881 - 897. CAMBRIDGE: COMPANY BIOLOGISTS LTD. ISSN 1754-8411

Fang, Jian ORCID: 0000-0003-0096-1146, Ianni, Alessandro ORCID: 0000-0001-7398-589X, Smolka, Christian, Vakhrusheva, Olesya, Nolte, Hendrik, Kruger, Marcus, Wietelmann, Astrid, Simonet, Nicolas G., Adrian-Segarra, Juan M. ORCID: 0000-0002-3712-0554, Vaquero, Alejandro, Braun, Thomas ORCID: 0000-0002-6165-4804 and Bober, Eva (2017). Sirt7 promotes adipogenesis in the mouse by inhibiting autocatalytic activation of Sirt1. Proc. Natl. Acad. Sci. U. S. A., 114 (40). S. E8352 - 10. WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Ianni, Alessandro ORCID: 0000-0001-7398-589X, Hoelper, Soraya, Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804 and Bober, Eva (2017). Sirt7 stabilizes rDNA heterochromatin through recruitment of DNMT1 and Sirt1. Biochem. Biophys. Res. Commun., 492 (3). S. 434 - 441. SAN DIEGO: ACADEMIC PRESS INC ELSEVIER SCIENCE. ISSN 1090-2104

Rajman, Marek ORCID: 0000-0001-9060-2432, Metge, Franziska, Fiore, Roberto, Khudayberdiev, Sharof, Aksoy-Aksel, Ayla, Bicker, Silvia, Reschke, Cristina Ruedell, Raoof, Rana ORCID: 0000-0001-5418-1407, Brennan, Gary P., Delanty, Norman, Farrell, Michael A., O'Brien, Donncha F., Bauer, Sebastian, Norwood, Braxton, Veno, Morten T., Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804, Kjems, Jorgen ORCID: 0000-0003-4128-9317, Rosenow, Felix, Henshall, David C., Dieterich, Christoph and Schratt, Gerhard (2017). A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses. Embo J., 36 (12). S. 1770 - 1788. HOBOKEN: WILEY. ISSN 1460-2075

Wilhelm, Kerstin, Happel, Katharina, Eelen, Guy, Schoors, Sandra, Oellerich, Mark F., Lim, Radiance ORCID: 0000-0002-9865-7064, Zimmermann, Barbara, Aspalter, Irene M., Franco, Claudio A., Boettger, Thomas ORCID: 0000-0003-4280-8449, Braun, Thomas ORCID: 0000-0002-6165-4804, Fruttiger, Marcus ORCID: 0000-0002-6962-5485, Rajewsky, Klaus ORCID: 0000-0002-6633-6370, Keller, Charles, Bruening, Jens C., Gerhardt, Holger ORCID: 0000-0002-3030-0384, Carmeliet, Peter ORCID: 0000-0001-7961-1821 and Potente, Michael ORCID: 0000-0002-5689-0036 (2016). FOXO1 couples metabolic activity and growth state in the vascular endothelium. Nature, 529 (7585). S. 216 - 234. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4687

Islam, Md Shariful, Nolte, Hendrik, Jacob, Wright, Ziegler, Anna B., Puetz, Stefanie, Grosjean, Yael ORCID: 0000-0003-0689-8344, Szczepanowska, Karolina ORCID: 0000-0003-4689-2350, Trifunovic, Aleksandra, Braun, Thomas ORCID: 0000-0002-6165-4804, Heumann, Hermann, Heumann, Rolf, Hovemann, Bernhard, Moore, Darren J. and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2016). Human R1441C LRRK2 regulates the synaptic vesicle proteome and phosphoproteome in a Drosophila model of Parkinson's disease. Hum. Mol. Genet., 25 (24). S. 5365 - 5383. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2083

Mehta, Aditi, Cordero, Julio, Dobersch, Stephanie, Romero-Olmedo, Addi J., Savai, Rajkumar, Bodner, Johannes, Chao, Cho-Ming, Fink, Ludger, Guzman-Diaz, Ernesto, Singh, Indrabahadur ORCID: 0000-0002-1474-7928, Dobreva, Gergana ORCID: 0000-0002-4814-9416, Rapp, Ulf R., Guenther, Stefan, Ilinskaya, Olga N., Bellusci, Saverio, Dammann, Reinhard H., Braun, Thomas ORCID: 0000-0002-6165-4804, Seeger, Werner ORCID: 0000-0003-1946-0894, Gattenloehner, Stefan, Tresch, Achim, Guenther, Andreas and Barreto, Guillermo ORCID: 0000-0002-7777-4712 (2016). Non-invasive lung cancer diagnosis by detection of GATA6 and NKX2-1 isoforms in exhaled breath condensate. EMBO Mol. Med., 8 (12). S. 1380 - 1390. HOBOKEN: WILEY. ISSN 1757-4684

Schild, Marius, Ruhs, Aaron, Beiter, Thomas ORCID: 0000-0001-7299-7303, Zuegel, Martina, Hudemann, Jens, Reimer, Anna, Krumholz-Wagner, Ilke, Wagner, Carola, Keller, Janine, Eder, Klaus, Krueger, Karsten, Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804, Niess, Andreas, Steinacker, Juergen and Mooren, Frank C. (2015). Basal and exercise induced label-free quantitative protein profiling of m. vastus lateralis in trained and untrained individuals. J. Proteomics, 122. S. 119 - 133. AMSTERDAM: ELSEVIER. ISSN 1876-7737

Al-Furoukh, Natalie, Ianni, Alessandro ORCID: 0000-0001-7398-589X, Nolte, Hendrik, Hoelper, Soraya, Krueger, Marcus ORCID: 0000-0003-2008-4582, Wanrooij, Sjoerd ORCID: 0000-0001-6126-4382 and Braun, Thomas ORCID: 0000-0002-6165-4804 (2015). ClpX stimulates the mitochondrial unfolded protein response (UPRmt) in mammalian cells. Biochim. Biophys. Acta-Mol. Cell Res., 1853 (10). S. 2580 - 2592. AMSTERDAM: ELSEVIER SCIENCE BV. ISSN 1879-2596

Hoelper, Soraya, Nolte, Hendrik, Bober, Eva, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2015). Dissection of metabolic pathways in the Db/Db mouse model by integrative proteome and acetylome analysis. Mol. Biosyst., 11 (3). S. 908 - 923. CAMBRIDGE: ROYAL SOC CHEMISTRY. ISSN 1742-2051

Nolte, Hendrik, Hoelper, Soraya, Housley, Michael P., Islam, Shariful, Piller, Tanja, Konzer, Anne, Stainier, Didier Y. R., Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2015). Dynamics of zebrafish fin regeneration using a pulsed SILAC approach. Proteomics, 15 (4). S. 739 - 752. HOBOKEN: WILEY. ISSN 1615-9861

Buyandelger, Byambajav, Mansfield, Catherine ORCID: 0000-0002-5063-5181, Kostin, Sawa, Choi, Onjee, Roberts, Angharad M., Ware, James S., Mazzarotto, Francesco ORCID: 0000-0002-6159-9980, Pesce, Francesco ORCID: 0000-0002-2882-4226, Buchan, Rachel, Isaacson, Rivka L., Vouffo, Josee, Gunkel, Sylvia, Knoll, Gudrun, McSweeney, Sara J., Wei, Heming, Perrot, Andreas ORCID: 0000-0002-8800-342X, Pfeiffer, Conny, Toliat, Mohammad Reza, Ilieva, Kristina, Krysztofinska, Ewelina, Lopez-Olaneta, Marina M., Gomez-Salinero, Jesus M., Schmidt, Albrecht, Ng, Keat-Eng, Teucher, Niels, Chen, Ju, Teichmann, Martin ORCID: 0000-0002-5257-0510, Eilers, Martin ORCID: 0000-0002-0376-6533, Haverkamp, Wilhelm, Regitz-Zagrosek, Vera, Hasenfuss, Gerd, Braun, Thomas ORCID: 0000-0002-6165-4804, Pennell, Dudley J., Gould, Ian, Barton, Paul J. R., Lara-Pezzi, Enrique ORCID: 0000-0002-2743-1033, Schaefer, Sebastian, Huebner, Norbert, Felkin, Leanne E., O'Regan, Declan P., Brand, Thomas, Milting, Hendrik, Nuernberg, Peter, Schneider, Michael D., Prasad, Sanjay, Petretto, Enrico and Knoll, Ralph (2015). ZBTB17 (MIZ1) Is Important for the Cardiac Stress Response and a Novel Candidate Gene for Cardiomyopathy and Heart Failure. Circ.-Cardiovasc. Genet., 8 (5). S. 643 - 653. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS. ISSN 1942-3268

Nolte, Hendrik, Hoelper, Soraya, Selbach, Matthias, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2014). Assessment of Serum Protein Dynamics by Native SILAC Flooding (SILflood). Anal. Chem., 86 (22). S. 11033 - 11038. WASHINGTON: AMER CHEMICAL SOC. ISSN 1520-6882