Universität zu Köln

Al-Furoukh, Natalie, Ianni, Alessandro ORCID: 0000-0001-7398-589X, Nolte, Hendrik, Hoelper, Soraya, Krueger, Marcus ORCID: 0000-0003-2008-4582, Wanrooij, Sjoerd ORCID: 0000-0001-6126-4382 and Braun, Thomas ORCID: 0000-0002-6165-4804 (2015). ClpX stimulates the mitochondrial unfolded protein response (UPRmt) in mammalian cells. Biochim. Biophys. Acta-Mol. Cell Res., 1853 (10). S. 2580 - 2592. AMSTERDAM: ELSEVIER SCIENCE BV. ISSN 1879-2596

Aravamudhan, Sriram, Turk, Clara, Bock, Theresa ORCID: 0000-0002-8308-4021, Keufgens, Lena ORCID: 0000-0001-6892-7302, Nolte, Hendrik, Lang, Franziska, Krishnan, Ramesh Kumar, Konig, Tim ORCID: 0000-0002-3484-1196, Hammerschmidt, Philipp, Schindler, Natalie ORCID: 0000-0001-7281-4597, Brodesser, Susanne, Rozsivalova, Dieu Hien, Rugarli, Elena, Trifunovic, Aleksandra, Bruening, Jens, Langer, Thomas, Braun, Thomas and Krueger, Marcus (2021). Phosphoproteomics of the developing heart identifies PERM1-An outer mitochondrial membrane protein. J. Mol. Cell. Cardiol., 154. S. 41 - 60. OXFORD: ELSEVIER SCI LTD. ISSN 1095-8584

Bock, Theresa ORCID: 0000-0002-8308-4021, Turk, Clara, Aravamudhan, Sriram, Keufgens, Lena, Bloch, Wilhelm, Rozsivalova, Dieu Hien, Romanello, Vanina, Nogara, Leonardo, Blaauw, Bert, Trifunovic, Aleksandra ORCID: 0000-0002-5472-3517, Braun, Thomas and Krueger, Marcus (2021). PERM1 interacts with the MICOS-MIB complex to connect the mitochondria and sarcolemma via ankyrin B. Nat. Commun., 12 (1). BERLIN: NATURE PORTFOLIO. ISSN 2041-1723

Buyandelger, Byambajav, Mansfield, Catherine ORCID: 0000-0002-5063-5181, Kostin, Sawa, Choi, Onjee, Roberts, Angharad M., Ware, James S., Mazzarotto, Francesco ORCID: 0000-0002-6159-9980, Pesce, Francesco ORCID: 0000-0002-2882-4226, Buchan, Rachel, Isaacson, Rivka L., Vouffo, Josee, Gunkel, Sylvia, Knoll, Gudrun, McSweeney, Sara J., Wei, Heming, Perrot, Andreas ORCID: 0000-0002-8800-342X, Pfeiffer, Conny, Toliat, Mohammad Reza, Ilieva, Kristina, Krysztofinska, Ewelina, Lopez-Olaneta, Marina M., Gomez-Salinero, Jesus M., Schmidt, Albrecht, Ng, Keat-Eng, Teucher, Niels, Chen, Ju, Teichmann, Martin ORCID: 0000-0002-5257-0510, Eilers, Martin ORCID: 0000-0002-0376-6533, Haverkamp, Wilhelm, Regitz-Zagrosek, Vera, Hasenfuss, Gerd, Braun, Thomas ORCID: 0000-0002-6165-4804, Pennell, Dudley J., Gould, Ian, Barton, Paul J. R., Lara-Pezzi, Enrique ORCID: 0000-0002-2743-1033, Schaefer, Sebastian, Huebner, Norbert, Felkin, Leanne E., O'Regan, Declan P., Brand, Thomas, Milting, Hendrik, Nuernberg, Peter, Schneider, Michael D., Prasad, Sanjay, Petretto, Enrico and Knoll, Ralph (2015). ZBTB17 (MIZ1) Is Important for the Cardiac Stress Response and a Novel Candidate Gene for Cardiomyopathy and Heart Failure. Circ.-Cardiovasc. Genet., 8 (5). S. 643 - 653. PHILADELPHIA: LIPPINCOTT WILLIAMS & WILKINS. ISSN 1942-3268

Fang, Jian ORCID: 0000-0003-0096-1146, Ianni, Alessandro ORCID: 0000-0001-7398-589X, Smolka, Christian, Vakhrusheva, Olesya, Nolte, Hendrik, Kruger, Marcus, Wietelmann, Astrid, Simonet, Nicolas G., Adrian-Segarra, Juan M. ORCID: 0000-0002-3712-0554, Vaquero, Alejandro, Braun, Thomas ORCID: 0000-0002-6165-4804 and Bober, Eva (2017). Sirt7 promotes adipogenesis in the mouse by inhibiting autocatalytic activation of Sirt1. Proc. Natl. Acad. Sci. U. S. A., 114 (40). S. E8352 - 10. WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Hoelper, Soraya, Nolte, Hendrik, Bober, Eva, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2015). Dissection of metabolic pathways in the Db/Db mouse model by integrative proteome and acetylome analysis. Mol. Biosyst., 11 (3). S. 908 - 923. CAMBRIDGE: ROYAL SOC CHEMISTRY. ISSN 1742-2051

Ianni, Alessandro ORCID: 0000-0001-7398-589X, Hoelper, Soraya, Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804 and Bober, Eva (2017). Sirt7 stabilizes rDNA heterochromatin through recruitment of DNMT1 and Sirt1. Biochem. Biophys. Res. Commun., 492 (3). S. 434 - 441. SAN DIEGO: ACADEMIC PRESS INC ELSEVIER SCIENCE. ISSN 1090-2104

Ianni, Alessandro ORCID: 0000-0001-7398-589X, Hofmann, Michael, Kumari, Poonam, Tarighi, Shahriar, Al-Tamari, Hamza M., Goergens, Andre, Giebel, Bernd, Nolte, Hendrik, Krueger, Marcus, Salwig, Isabelle, Pullamsetti, Soni Savai, Guenther, Andreas, Schneider, Andre and Braun, Thomas (2021). Depletion of Numb and Numblike in Murine Lung Epithelial Cells Ameliorates Bleomycin-Induced Lung Fibrosis by Inhibiting the beta-Catenin Signaling Pathway. Front. Cell. Dev. Biol., 9. LAUSANNE: FRONTIERS MEDIA SA. ISSN 2296-634X

Ianni, Alessandro ORCID: 0000-0001-7398-589X, Kumari, Poonam, Tarighi, Shahriar ORCID: 0000-0003-3807-9212, Simonet, Nicolas G., Popescu, Daniela, Guenther, Stefan, Holper, Soraya, Schmidt, Andreas, Smolka, Christian ORCID: 0000-0003-2341-2406, Yue, Shijing, Kruger, Marcus, Fiorillo, Claudia, Vaquero, Alejandro, Bober, Eva and Braun, Thomas ORCID: 0000-0002-6165-4804 (2021). SIRT7-dependent deacetylation of NPM promotes p53 stabilization following UV-induced genotoxic stress. Proc. Natl. Acad. Sci. U. S. A., 118 (5). WASHINGTON: NATL ACAD SCIENCES. ISSN 0027-8424

Islam, Md Shariful, Nolte, Hendrik, Jacob, Wright, Ziegler, Anna B., Puetz, Stefanie, Grosjean, Yael ORCID: 0000-0003-0689-8344, Szczepanowska, Karolina ORCID: 0000-0003-4689-2350, Trifunovic, Aleksandra, Braun, Thomas ORCID: 0000-0002-6165-4804, Heumann, Hermann, Heumann, Rolf, Hovemann, Bernhard, Moore, Darren J. and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2016). Human R1441C LRRK2 regulates the synaptic vesicle proteome and phosphoproteome in a Drosophila model of Parkinson's disease. Hum. Mol. Genet., 25 (24). S. 5365 - 5383. OXFORD: OXFORD UNIV PRESS. ISSN 1460-2083

Kallabis, Sebastian, Abraham, Lena, Mueller, Stefan, Dzialas, Verena, Tuerk, Clara, Wiederstein, Janica Lea, Bock, Theresa, Nolte, Hendrik, Nogara, Leonardo, Blaauw, Bert, Braun, Thomas and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2020). High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers. Skeletal Muscle, 10 (1). LONDON: BMC. ISSN 2044-5040

Kimoloi, Sammy ORCID: 0000-0003-3364-4980, Sen, Ayesha, Guenther, Stefan, Braun, Thomas, Brugmann, Tobias, Sasse, Philipp ORCID: 0000-0002-8502-9472, Wiesner, Rudolf J., Pla-Martin, David and Baris, Olivier R. (2022). Combined fibre atrophy and decreased muscle regeneration capacity driven by mitochondrial DNA alterations underlie the development of sarcopenia. J. Cachexia Sarcopenia Muscle, 13 (4). S. 2132 - 2146. HOBOKEN: WILEY. ISSN 2190-6009

Lang, Franziska, Aravamudhan, Sriram, Nolte, Hendrik, Tuerk, Clara, Hoelper, Soraya, Mueller, Stefan, Guenther, Stefan, Blaauw, Bert, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2017). Dynamic changes in the mouse skeletal muscle proteome during denervation-induced atrophy. Dis. Model. Mech., 10 (7). S. 881 - 897. CAMBRIDGE: COMPANY BIOLOGISTS LTD. ISSN 1754-8411

Lang, Franziska, Khaghani, Solmaz, Tuerk, Clara, Wiederstein, Janica Lea, Hoelper, Soraya, Piller, Tanja, Nogara, Leonardo ORCID: 0000-0002-7009-8707, Blaauw, Bert, Guenther, Stefan, Mueller, Stefan, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2018). Single Muscle Fiber Proteomics Reveals Distinct Protein Changes in Slow and Fast Fibers during Muscle Atrophy. J. Proteome Res., 17 (10). S. 3333 - 3348. WASHINGTON: AMER CHEMICAL SOC. ISSN 1535-3907

Mehta, Aditi, Cordero, Julio, Dobersch, Stephanie, Romero-Olmedo, Addi J., Savai, Rajkumar, Bodner, Johannes, Chao, Cho-Ming, Fink, Ludger, Guzman-Diaz, Ernesto, Singh, Indrabahadur ORCID: 0000-0002-1474-7928, Dobreva, Gergana ORCID: 0000-0002-4814-9416, Rapp, Ulf R., Guenther, Stefan, Ilinskaya, Olga N., Bellusci, Saverio, Dammann, Reinhard H., Braun, Thomas ORCID: 0000-0002-6165-4804, Seeger, Werner ORCID: 0000-0003-1946-0894, Gattenloehner, Stefan, Tresch, Achim, Guenther, Andreas and Barreto, Guillermo ORCID: 0000-0002-7777-4712 (2016). Non-invasive lung cancer diagnosis by detection of GATA6 and NKX2-1 isoforms in exhaled breath condensate. EMBO Mol. Med., 8 (12). S. 1380 - 1390. HOBOKEN: WILEY. ISSN 1757-4684

Nolte, Hendrik, Hoelper, Soraya, Housley, Michael P., Islam, Shariful, Piller, Tanja, Konzer, Anne, Stainier, Didier Y. R., Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2015). Dynamics of zebrafish fin regeneration using a pulsed SILAC approach. Proteomics, 15 (4). S. 739 - 752. HOBOKEN: WILEY. ISSN 1615-9861

Nolte, Hendrik, Hoelper, Soraya, Selbach, Matthias, Braun, Thomas ORCID: 0000-0002-6165-4804 and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2014). Assessment of Serum Protein Dynamics by Native SILAC Flooding (SILflood). Anal. Chem., 86 (22). S. 11033 - 11038. WASHINGTON: AMER CHEMICAL SOC. ISSN 1520-6882

Rajman, Marek ORCID: 0000-0001-9060-2432, Metge, Franziska, Fiore, Roberto, Khudayberdiev, Sharof, Aksoy-Aksel, Ayla, Bicker, Silvia, Reschke, Cristina Ruedell, Raoof, Rana ORCID: 0000-0001-5418-1407, Brennan, Gary P., Delanty, Norman, Farrell, Michael A., O'Brien, Donncha F., Bauer, Sebastian, Norwood, Braxton, Veno, Morten T., Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804, Kjems, Jorgen ORCID: 0000-0003-4128-9317, Rosenow, Felix, Henshall, David C., Dieterich, Christoph and Schratt, Gerhard (2017). A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses. Embo J., 36 (12). S. 1770 - 1788. HOBOKEN: WILEY. ISSN 1460-2075

Schild, Marius, Ruhs, Aaron, Beiter, Thomas ORCID: 0000-0001-7299-7303, Zuegel, Martina, Hudemann, Jens, Reimer, Anna, Krumholz-Wagner, Ilke, Wagner, Carola, Keller, Janine, Eder, Klaus, Krueger, Karsten, Krueger, Marcus ORCID: 0000-0003-2008-4582, Braun, Thomas ORCID: 0000-0002-6165-4804, Niess, Andreas, Steinacker, Juergen and Mooren, Frank C. (2015). Basal and exercise induced label-free quantitative protein profiling of m. vastus lateralis in trained and untrained individuals. J. Proteomics, 122. S. 119 - 133. AMSTERDAM: ELSEVIER. ISSN 1876-7737

Seibert, Markus ORCID: 0000-0001-5708-4856, Kruger, Marcus, Watson, Nikolaus A., Sen, Onur ORCID: 0000-0002-6685-7010, Daum, John R., Slotman, Johan A. ORCID: 0000-0001-9705-9620, Braun, Thomas ORCID: 0000-0002-6165-4804, Houtsmuller, Adriaan B., Gorbsky, Gary J., Jacob, Ralf ORCID: 0000-0002-9251-6578, Kracht, Michael, Higgins, Jonathan M. G. and Schmitz, M. Lienhard ORCID: 0000-0002-6984-7192 (2019). CDK1-mediated phosphorylation at H2B serine 6 is required for mitotic chromosome segregation. J. Cell Biol., 218 (4). S. 1164 - 1182. NEW YORK: ROCKEFELLER UNIV PRESS. ISSN 1540-8140

Singh, Indrabahadur ORCID: 0000-0002-1474-7928, Contreras, Adriana, Cordero, Julio, Rubio, Karla ORCID: 0000-0002-8337-3106, Dobersch, Stephanie, Guenther, Stefan, Jeratsch, Sylvia, Mehta, Aditi, Krueger, Marcus ORCID: 0000-0003-2008-4582, Graumann, Johannes ORCID: 0000-0002-3015-5850, Seeger, Werner ORCID: 0000-0003-1946-0894, Dobreva, Gergana ORCID: 0000-0002-4814-9416, Braun, Thomas ORCID: 0000-0002-6165-4804 and Barreto, Guillermo ORCID: 0000-0002-7777-4712 (2018). MiCEE is a ncRNA-protein complex that mediates epigenetic silencing and nucleolar organization. Nature Genet., 50 (7). S. 990 - 1005. NEW YORK: NATURE PUBLISHING GROUP. ISSN 1546-1718

Sreenivasan, Krishnamoorthy, Ianni, Alessandro ORCID: 0000-0001-7398-589X, Kuenne, Carsten, Strilic, Boris, Guenther, Stefan, Perdiguero, Eusebio, Krueger, Marcus ORCID: 0000-0003-2008-4582, Spuler, Simone, Offermanns, Stefan, Gomez-del Arco, Pablo ORCID: 0000-0001-6748-7157, Miguel Redondo, Juan, Munoz-Canoves, Pura, Kim, Johnny and Braun, Thomas (2020). Attenuated Epigenetic Suppression of Muscle Stem Cell Necroptosis Is Required for Efficient Regeneration of Dystrophic Muscles. Cell Reports, 31 (7). CAMBRIDGE: CELL PRESS. ISSN 2211-1247

Wiederstein, Janica Lea, Nolte, Hendrik, Guenther, Stefan, Piller, Tanja, Baraldo, Martina, Kostin, Sawa, Bloch, Wilhelm, Schindler, Natalie ORCID: 0000-0001-7281-4597, Sandri, Marco, Blaauw, Bert, Braun, Thomas ORCID: 0000-0002-6165-4804, Hoelper, Soraya and Krueger, Marcus ORCID: 0000-0003-2008-4582 (2018). Skeletal Muscle-Specific Methyltransferase METTL21C Trimethylates p97 and Regulates Autophagy-Associated Protein Breakdown. Cell Reports, 23 (5). S. 1342 - 1357. CAMBRIDGE: CELL PRESS. ISSN 2211-1247

Wilhelm, Kerstin, Happel, Katharina, Eelen, Guy, Schoors, Sandra, Oellerich, Mark F., Lim, Radiance ORCID: 0000-0002-9865-7064, Zimmermann, Barbara, Aspalter, Irene M., Franco, Claudio A., Boettger, Thomas ORCID: 0000-0003-4280-8449, Braun, Thomas ORCID: 0000-0002-6165-4804, Fruttiger, Marcus ORCID: 0000-0002-6962-5485, Rajewsky, Klaus ORCID: 0000-0002-6633-6370, Keller, Charles, Bruening, Jens C., Gerhardt, Holger ORCID: 0000-0002-3030-0384, Carmeliet, Peter ORCID: 0000-0001-7961-1821 and Potente, Michael ORCID: 0000-0002-5689-0036 (2016). FOXO1 couples metabolic activity and growth state in the vascular endothelium. Nature, 529 (7585). S. 216 - 234. LONDON: NATURE PUBLISHING GROUP. ISSN 1476-4687